PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn130721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 362aa MW: 39908.8 Da PI: 7.4044

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn130721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	136	157	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f++ G+Ck Gd+C FaHg Achn130721 136 DPCPEFRK-GHCKSGDSCEFAHG 157 69****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.9E-6	128	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-4	132	158	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	132	159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	136	157	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.427	167	191	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5	167	190	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MMMTNSEAPR SHPTVHVPPC YLLDDPTANL NSRGIPVSLN GTATSPTSDN TTNCASPYDG 60 LTAFRRYLPS NSDSDFQSEE YGILVDASAC EYFRMFEFKV RKCSRARSHD WTECPYAHAG 120 EKARRRDPRR HKYTGDPCPE FRKGHCKSGD SCEFAHGVFE CWLHPTRYRT QPCKDGAHCP 180 RRVCFFAHTP DQLRVLPQIS DSYDGSPSRL GFDSFGSSPT SSLCSPPDSP PMSPSVSLGA 240 TSVSELSSVM LNLQIGSMRM SMSPPSWGIR MGSGSPRSPA IVGPGFLSLP STPTRTLTRS 300 GLGAFDLWDQ TREEEPAMER VESGRDLRAR MYAKLSKENS LDRVDSISPC PDLGWVSELV 360 K*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MMMTNSEAPR SHPTVHVPPC YLLDDPTANL NSRGIPVSLN GTATSPTSDN TTNCASPYDG  60
LTAFRRYLPS NSDSDFQSEE YGILVDASAC EYFRMFEFKV RKCSRARSHD WTECPYAHAG  120
EKARRRDPRR HKYTGDPCPE FRKGHCKSGD SCEFAHGVFE CWLHPTRYRT QPCKDGAHCP  180
RRVCFFAHTP DQLRVLPQIS DSYDGSPSRL GFDSFGSSPT SSLCSPPDSP PMSPSVSLGA  240
TSVSELSSVM LNLQIGSMRM SMSPPSWGIR MGSGSPRSPA IVGPGFLSLP STPTRTLTRS  300
GLGAFDLWDQ TREEEPAMER VESGRDLRAR MYAKLSKENS LDRVDSISPC PDLGWVSELV  360
K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058899.1	1e-149	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-103	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2R6PD46	0.0	A0A2R6PD46_ACTCH; Zinc finger CCCH domain-containing protein
STRING	XP_009784195.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	6e-92	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]