PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn129501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 370aa    MW: 42489.8 Da    PI: 4.9442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn129501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-111712164385
                 S...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3  43 g...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     + W+v+l+y+  ++++v+++GW++Fv++n L+++Df+ F+l 
  Achn129501 171 RfveKHWDVTLTYSCADSEFVISTGWQKFVSDNMLEARDFIQFYLP 216
                 355599*******999999************************975 PP
2B332.81.2e-10243317176
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                 f+ +l +++  +s rlvl   +++ +   +++  ++ +l+++d++ + W +k +++ k+++y+ t+GWkeF ++ +L++
  Achn129501 243 FELQL-KPHDISSERLVLGMGHVR-IllpEIN--TTLELRFTDSQKKDWCMKTKFDYKRDGYLVTNGWKEFLNERNLDT 317
                 55666.455666678********5.5586666..4559************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-9114215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-11118219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.193175233IPR003340B3 DNA binding domain
PfamPF023622.1E-8175216IPR003340B3 DNA binding domain
CDDcd100177.36E-8177215No hitNo description
SuperFamilySSF1019363.92E-10239316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-11239321IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.443242341IPR003340B3 DNA binding domain
PfamPF023621.4E-8244317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MATFHQVNRF LFQLPFNTND KVLQRLLIPL EHVRKLFLGI YVPRAGPFLA VGEAFYLEFT  60
DPLNRYQTEI ATETESLDNM IVSGEDSKSG NQTEGSDKMS VSGEESKPGD SSGESEKDNM  120
LIEKHLTRRD VEDNLFFRFD LVSKFFPPPP VGRIPNAQLL LSSETVDDND RFVEKHWDVT  180
LTYSCADSEF VISTGWQKFV SDNMLEARDF IQFYLPDPRT HDKHYDIEVV RSHELDLKEN  240
FVFELQLKPH DISSERLVLG MGHVRILLPE INTTLELRFT DSQKKDWCMK TKFDYKRDGY  300
LVTNGWKEFL NERNLDTMHK IKLCKPALPL RKYHFLISHE KTENDGGSGT DPFQSVDDDG  360
GSSSNIGSN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.19e-06B3 family protein