PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn128851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 504aa MW: 55533.2 Da PI: 5.6676

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn128851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	416	3.4e-127	137	500	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++L++cA v+ g+++la+al+ +++ l + +++ + ++a yf AL++rl++ ++s+l + e+ ++ f+e+sP+lkf+h+ Achn128851 137 LVHVLMTCAGSVQRGEFSLARALIDEMQGLltRVNNRCGIGKVAGYFIDALSRRLFSpQGSGLI---GS-------AYENEILYHHFYEASPYLKFAHF 225 689***********************99655666679**************3333333...22.......3444567889********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 taNqaIlea++g+++vH+iDf+ +qGlQWpaL+qaLa R++gpp lR+Tg+g+p+s+ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L+ Achn128851 226 TANQAILEAFDGHDCVHVIDFNFMQGLQWPALIQALALRSGGPPLLRLTGIGPPSSDGRDSLREIGLRLAELAHSVNVQFAFRGVAASRLEDVKPWMLQ 324 *********************************************************************************************** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 v p+Ea+a+n+++qlhrll + + s++++vL +++l+Pkv++vveqea+hn+++Fl+rf+eal+yys+ fdsle+ ++ ++ + + +++rei Achn128851 325 VGPKEAVAINFIMQLHRLLVSAPTRGSPIEAVLGWIRNLNPKVMTVVEQEANHNQPEFLDRFTEALHYYSTTFDSLETC---STQPDKALAEIYIQREI 420 ***************99999999***********************************************9...457777788888* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n+v+ceg +r+erhe l+kWr+rl+ aGFkp++l+++a kqa++ll ++ +gy vee+ g+l+lgW++rpL++vSaW+ Achn128851 421 CNIVCCEGLARVERHEPLAKWRSRLRGAGFKPLHLGSNAFKQASMLLTLFSAEGYCVEEDGGCLTLGWHSRPLIAVSAWQ 500 *****************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	7.1E-29	21	86	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	9.3E-19	21	94	No hit	No description
PROSITE profile	PS50985	61.953	111	480	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-124	137	500	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MDLYRSGSSS SCAGKAPDQI DGLLAGAGYR VRSSELRNVA QRLERLETVM VNAPSEISHL 60 ADEVVLHNPS DLASWVDSLL SELNQPVPVP DLSDLTYAES LDPTVNTGAW MEHHTAEQHR 120 EIPQVLTAVE EDSCIQLVHV LMTCAGSVQR GEFSLARALI DEMQGLLTRV NNRCGIGKVA 180 GYFIDALSRR LFSPQGSGLI GSAYENEILY HHFYEASPYL KFAHFTANQA ILEAFDGHDC 240 VHVIDFNFMQ GLQWPALIQA LALRSGGPPL LRLTGIGPPS SDGRDSLREI GLRLAELAHS 300 VNVQFAFRGV AASRLEDVKP WMLQVGPKEA VAINFIMQLH RLLVSAPTRG SPIEAVLGWI 360 RNLNPKVMTV VEQEANHNQP EFLDRFTEAL HYYSTTFDSL ETCSTQPDKA LAEIYIQREI 420 CNIVCCEGLA RVERHEPLAK WRSRLRGAGF KPLHLGSNAF KQASMLLTLF SAEGYCVEED 480 GGCLTLGWHS RPLIAVSAWQ AIP*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MDLYRSGSSS SCAGKAPDQI DGLLAGAGYR VRSSELRNVA QRLERLETVM VNAPSEISHL  60
ADEVVLHNPS DLASWVDSLL SELNQPVPVP DLSDLTYAES LDPTVNTGAW MEHHTAEQHR  120
EIPQVLTAVE EDSCIQLVHV LMTCAGSVQR GEFSLARALI DEMQGLLTRV NNRCGIGKVA  180
GYFIDALSRR LFSPQGSGLI GSAYENEILY HHFYEASPYL KFAHFTANQA ILEAFDGHDC  240
VHVIDFNFMQ GLQWPALIQA LALRSGGPPL LRLTGIGPPS SDGRDSLREI GLRLAELAHS  300
VNVQFAFRGV AASRLEDVKP WMLQVGPKEA VAINFIMQLH RLLVSAPTRG SPIEAVLGWI  360
RNLNPKVMTV VEQEANHNQP EFLDRFTEAL HYYSTTFDSL ETCSTQPDKA LAEIYIQREI  420
CNIVCCEGLA RVERHEPLAK WRSRLRGAGF KPLHLGSNAF KQASMLLTLF SAEGYCVEED  480
GGCLTLGWHS RPLIAVSAWQ AIP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-57	144	499	25	377	Protein SCARECROW
5b3h_D	1e-57	144	499	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF588656	0.0	KF588656.1 Actinidia deliciosa GA repressor DELLA (RGL3a) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028073596.1	0.0	DELLA protein SLR1-like
Swissprot	Q9LQT8	1e-155	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A2R6Q563	0.0	A0A2R6Q563_ACTCH; DELLA protein
STRING	VIT_11s0016g04630.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15141	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-158	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]