PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn127421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 652aa    MW: 73721.8 Da    PI: 6.5138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn127421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21e-115406092795
                 ---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
          B3  27 ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                 +++ + ++ + +ed  ++++W++++ +  ++ks++y+l+ ++ +Fv+angL+egDf+v +  ++ ++++++++
  Achn127421 540 ELEARDGIPIAMEDiGTSQVWNMRYWFwpNNKSRMYLLE-NTGDFVQANGLQEGDFIVMY--SDvKCGKYLIR 609
                 455556677999996777*******55777777777777.*******************9..55599988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0011515614IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15532621IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-13532605IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-8546608IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKGEEYQEIW LERQEQEQDL LDVYEASIFY NDSTGLPDFP RMSSSSSAPA PAKPIASSSP  60
SASSSSSASW AMLKSDAEEY GEKKSISNNN DNRLTPPVAS LSAATSMEVL QPPQSYGDAD  120
CMDMMETFGS MELIESNEIW DPSSIFQTEQ PPQESQHYPQ NGDSFMFEEI NIEMRERERE  180
QNKPPTDELG VLFFEWLKSN KESISAEDMR SIKLRRATVE CASKRLGSTK DGLKQLLKLI  240
LEWVEQYQLQ KKQRLAELNP PFPPPYLEPP LQNPNPNSLP PNINNPCCMP STWVPLPRPP  300
YYPTTAVMAA TPGLYGGDPY GSSVPVPVPN YAQSMEYNML DSSQTWPPSQ YAMSAQYNQF  360
SENNNNNNNR SNNNSIPMVT PLSPAFVGYG NQYQYYQRSG NKLVKLGSSA TKEARKKRMA  420
RQRRFLSHHH HHQHHHHHHN HNQQNQHQNQ NPDRQHHRLG GDQNCLNVGQ ASSANWDYWP  480
NAAALASSNV AVVAVEALQQ PPLVQSQNYQ QQQPQWRVSS DSKVSSDWQR QKEAEIHLPE  540
LEARDGIPIA MEDIGTSQVW NMRYWFWPNN KSRMYLLENT GDFVQANGLQ EGDFIVMYSD  600
VKCGKYLIRG VKVRQPRPKS EAKKPSKSHK NTHTASPSAA SGSSPPPSHR E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-2653161224105B3 domain-containing transcription factor FUS3
6j9b_D2e-2653161224105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120743.10.0B3 domain-containing transcription factor ABI3
TrEMBLA0A2R6PPH90.0A0A2R6PPH9_ACTCH; B3 domain-containing transcription factor
STRINGcassava4.1_021232m1e-164(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-46B3 family protein