PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn126561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 525aa MW: 57582.4 Da PI: 5.4148

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn126561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.2	1.4e-127	142	505	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++Ll+cA v+ g+++la al+ +++ l + +++ + ++a yf AL++rl++ ++s+l + e+ +++ f+e+sP+lkf+h+ Achn126561 142 LVHVLLTCAGSVQRGEFSLAGALIDEMQGLltRVNNRCGIGKVAGYFIDALNRRLFSpQGSGLI---GS-------AYENDIFYHHFYEASPYLKFAHF 230 689***********************99655666679**************3333333...22.......3344567899********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L+ Achn126561 231 TANQAILEAFDGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGMGPPSSDGRDSLREIGLRLAELAHSVNVQFAFRGVAASRLEDVKPWMLQ 329 *********************************************************************************************** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 v p+Ea+a+n+++qlhrll ++ + +s++++vL +++l+Pkv++vveqea+hn+++Fl+rf+eal+yys++fdsle+ ++ ++ + + +++rei Achn126561 330 VGPKEAVAINSIMQLHRLLVSDPTRRSPIEDVLGWIRNLNPKVMTVVEQEANHNQPEFLDRFTEALHYYSTMFDSLETC---STQPDKALAEIYIQREI 425 **************************************************************************9...457777788888* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +nvv+ceg +r+erhe+l+kWr+rl+ aGFkp++l+++a kqa++ll ++ +gy vee++g+l+lgW++rpL++vSaW+ Achn126561 426 CNVVCCEGLARVERHESLAKWRARLSGAGFKPLHLGSNAFKQASMLLTLFSAEGYCVEENEGCLTLGWHSRPLIAVSAWQ 505 *****************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.5E-29	26	92	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	5.7E-19	26	99	No hit	No description
PROSITE profile	PS50985	62.053	116	485	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-125	142	505	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MGPYESAMSS SGSSSSCAGK APDQIDGLLA GAGYRVRSSE LRNVAQRLER LETVMVNTPS 60 EISHLANDAV LHNPSDLASW VDSLLSELNQ SAPIPELSDL TYAEPLDPAV NTGAWMEHHS 120 AEPHREIPQV LTAVEEDSCI RLVHVLLTCA GSVQRGEFSL AGALIDEMQG LLTRVNNRCG 180 IGKVAGYFID ALNRRLFSPQ GSGLIGSAYE NDIFYHHFYE ASPYLKFAHF TANQAILEAF 240 DGHDCVHVID FNLMQGLQWP ALIQALALRP GGPPLLRLTG MGPPSSDGRD SLREIGLRLA 300 ELAHSVNVQF AFRGVAASRL EDVKPWMLQV GPKEAVAINS IMQLHRLLVS DPTRRSPIED 360 VLGWIRNLNP KVMTVVEQEA NHNQPEFLDR FTEALHYYST MFDSLETCST QPDKALAEIY 420 IQREICNVVC CEGLARVERH ESLAKWRARL SGAGFKPLHL GSNAFKQASM LLTLFSAEGY 480 CVEENEGCLT LGWHSRPLIA VSAWQAIPQP TPPLGLVNPY NNVV*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MGPYESAMSS SGSSSSCAGK APDQIDGLLA GAGYRVRSSE LRNVAQRLER LETVMVNTPS  60
EISHLANDAV LHNPSDLASW VDSLLSELNQ SAPIPELSDL TYAEPLDPAV NTGAWMEHHS  120
AEPHREIPQV LTAVEEDSCI RLVHVLLTCA GSVQRGEFSL AGALIDEMQG LLTRVNNRCG  180
IGKVAGYFID ALNRRLFSPQ GSGLIGSAYE NDIFYHHFYE ASPYLKFAHF TANQAILEAF  240
DGHDCVHVID FNLMQGLQWP ALIQALALRP GGPPLLRLTG MGPPSSDGRD SLREIGLRLA  300
ELAHSVNVQF AFRGVAASRL EDVKPWMLQV GPKEAVAINS IMQLHRLLVS DPTRRSPIED  360
VLGWIRNLNP KVMTVVEQEA NHNQPEFLDR FTEALHYYST MFDSLETCST QPDKALAEIY  420
IQREICNVVC CEGLARVERH ESLAKWRARL SGAGFKPLHL GSNAFKQASM LLTLFSAEGY  480
CVEENEGCLT LGWHSRPLIA VSAWQAIPQP TPPLGLVNPY NNVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-58	149	504	26	378	Protein SCARECROW
5b3h_A	3e-58	149	504	25	377	Protein SCARECROW
5b3h_D	3e-58	149	504	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF588657	0.0	KF588657.1 Actinidia deliciosa GA repressor DELLA (RGL3b) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028078849.1	0.0	DELLA protein SLN1-like
Swissprot	Q9LQT8	1e-157	GAI_ARATH; DELLA protein GAI
TrEMBL	V5QNW5	0.0	V5QNW5_ACTDE; GA repressor DELLA
STRING	XP_010249953.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15141	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-140	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]