PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn116121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 289aa    MW: 32575.8 Da    PI: 7.9957
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn116121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-122074153
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k+
  Achn116121 20 SIYRGVTRHRWTGRYEAHLWDkNCWNEaQNKKGRQGAYDDEEAAAHAYDLAALKK 74
                57*******************99999999988888*****************986 PP
2AP248.12.9e-1583134155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t e Aa a++ a+ +++g
  Achn116121  83 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEAAATAYDMAAIEYRG 134
                 89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-72074IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-102075IPR016177DNA-binding domain
PROSITE profilePS5103214.2492173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-82173IPR001471AP2/ERF domain
SMARTSM003803.7E-52176IPR001471AP2/ERF domain
PRINTSPR003672.8E-62233IPR001471AP2/ERF domain
PfamPF008476.6E-1183134IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1783144IPR016177DNA-binding domain
CDDcd000187.99E-1483144No hitNo description
PROSITE profilePS5103218.33484142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1784143IPR001471AP2/ERF domain
SMARTSM003801.2E-2484148IPR001471AP2/ERF domain
PRINTSPR003672.8E-6124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKVKRTRKSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD KNCWNEAQNK KGRQGAYDDE  60
EAAAHAYDLA ALKKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEA  120
AATAYDMAAI EYRGVNAVTN FDLSRYVKWL RPNQTNPNHS PPNHNHNHNH NHNPNLDLTP  180
TDESPPACLH HHQTPTSAAE STFPPPRPAS RALGILLQSS KFKEMLEWTS ADCQSPPTES  240
EPPRSSFPDD IQTFFDCQDS GGFTECDDIT FGDLSSFASH MFQGEFDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-147AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-147AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN49e-82AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2R6PUP81e-174A0A2R6PUP8_ACTCH; AP2-like ethylene-responsive transcription factor
TrEMBLA0A2R6PVM91e-174A0A2R6PVM9_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGcassava4.1_025233m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-58AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]