PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn111031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 250aa MW: 27279.3 Da PI: 8.4807

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn111031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.5	1.4e-33	38	95	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC s+ntkfCyynny sqPr+fC+aC+r+WtkGG+lr vPvGggr knk+ Achn111031 38 PTELVACPRCGSSNTKFCYYNNYKKSQPRHFCRACKRHWTKGGTLRSVPVGGGR-KNKH 95 678899*********************************************996.5554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-30	41	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.133	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGLSTKHVNS NEGLDWGKTI LDSGPKPPPA RRQQHQQPTE LVACPRCGSS NTKFCYYNNY 60 KKSQPRHFCR ACKRHWTKGG TLRSVPVGGG RKNKHLKTTT AAAITTSTST STAATGSQQQ 120 SQSLVGDQKD ISGILFHDFI NNSCNFSVKG LSGNNGSFMG STTLPPFTFS SLGTFERYPS 180 SSISTSFGSL DDYNFMEGLT SNNIASQPLW QVPTTSGAMD MPQYWNWEEL ESLVSSEGNI 240 PWDDCEIKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075070.1	9e-83	dof zinc finger protein DOF4.6-like
TrEMBL	A0A2R6QLH7	1e-159	A0A2R6QLH7_ACTCH; Dof zinc finger protein like
STRING	cassava4.1_034118m	2e-71	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-26	Dof family protein