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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn104391 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 224aa MW: 25571.6 Da PI: 7.0798 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.9 | 2e-17 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T++Ed+l+v+ +++lG++ W++Ia +++ gRt++++k++w+++l
Achn104391 10 RGNITPDEDDLIVKMHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
7999******************.*********.************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 1 | 59 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.34E-16 | 1 | 64 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 27.069 | 5 | 59 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.7E-16 | 9 | 57 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.0E-15 | 10 | 55 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.10E-12 | 14 | 55 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 224 aa Download sequence Send to blast |
MNYLRPDIKR GNITPDEDDL IVKMHALLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKKLR 60 SQGTDPNTHK KLSDPHVQEP KKRKNSNKKK KNNPKPQPQE EPEKLKVHNP KPIRIKPLGS 120 FSMSRNSSFD WTPTTTTTTT TTTASGTEVA DDPWSNFRYN EVGFLIGDDQ DHDMINCSDL 180 ECHSGVPTSN HTLEKLYEEY LQLLKTEDHD HVELDSFAES LLI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 7e-14 | 2 | 59 | 51 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028087834.1 | 1e-102 | transcription factor WER-like | ||||
| TrEMBL | A0A2R6R7I5 | 1e-163 | A0A2R6R7I5_ACTCH; Transcription factor like | ||||
| STRING | EOX95661 | 9e-91 | (Theobroma cacao) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22640.1 | 2e-36 | myb domain protein 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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