PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn102891

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 658aa MW: 73670.6 Da PI: 5.0482

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn102891	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	260.4	6.5e-80	184	523	1	342
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfsh 95 lv+ Ll+ Ae v +++ ++a++lL++ e +s +g+p+qR++ yf eAL++++ ++ +++k + ++ +++ +s +laa +f + P+++++ Achn102891 184 LVQNLLASAEKVGQQQYNRANKLLSQCDESSSDTGNPVQRVVYYFSEALREKIDWeTGRSTSKGMGKQQLLDYDkalVSPNLAAIVAFRQKLPFYQVCE 282 6899***********************************************9878899999997777776666888999999999******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 + qaI+e v+g+++vH iD++i +G+ L+qaLa R+e p l+iT+v+ +sk +leetgerL fA+++++pf+f+v++++++ dl+ + Achn102891 283 FSGMQAIVERVSGAKKVHLIDLEIRNGMRCTVLMQALAGRSECPIeLLKITAVAT---KSKSKLEETGERLMCFANSMNLPFSFSVIMVSDMLDLKDDL 378 *************************************7665499***...68*********************************** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++ +E++aVn +l +ll+++ le +++++++++P +vvv+e ea+hns+ F++rf+eal y a+fd+le + r + +r+ E ++ + Achn102891 379 FDLEAEETVAVNATCSLRSLLARPDRLET----LMRVLRNINPCIVVVTETEANHNSPFFVNRFIEALFSYGAVFDCLEDCMDRSDPNRKISESTYICP 473 *****************77777777....************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 +i n+va+eg+er+ rh + + Wr + ++G+ + +ls++ qa+l Achn102891 474 AILNIVAAEGEERIFRHVNISVWRTFFARFGMVEEELSTSSLYQANLFAV 523 ******************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.755	158	535	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-77	184	523	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MGKHPHLHGN EIWGDFGCYV ENTADDGLLW SEYQQEPQRQ LFSNLGILDD LYVDIVSPPF 60 QSYHHEELPE LASSHNENSL LDEDMMENAC AIPLSSLGIL KNYGSGFRRL HGERIKVPSY 120 STTCTQPVPK VNGRKLSTDD ILRLAGKKFI QSSSQRIDGI SALSHPFYTS FLGLSDEETK 180 DVELVQNLLA SAEKVGQQQY NRANKLLSQC DESSSDTGNP VQRVVYYFSE ALREKIDWET 240 GRSTSKGMGK QQLLDYDKAL VSPNLAAIVA FRQKLPFYQV CEFSGMQAIV ERVSGAKKVH 300 LIDLEIRNGM RCTVLMQALA GRSECPIELL KITAVATKSK SKLEETGERL MCFANSMNLP 360 FSFSVIMVSD MLDLKDDLFD LEAEETVAVN ATCSLRSLLA RPDRLETLMR VLRNINPCIV 420 VVTETEANHN SPFFVNRFIE ALFSYGAVFD CLEDCMDRSD PNRKISESTY ICPAILNIVA 480 AEGEERIFRH VNISVWRTFF ARFGMVEEEL STSSLYQANL FAVLIGANPY IVTWRLSRGA 540 NYFARLDEVE TDLTISCLFQ AKPIDRKLAS GSSSCTSDMN GKCLLLGGRE HRFLLSASKS 600 EQMETGSPNA GCSRCSQLNW NHSAVHNFNF LCENEALAPK KDDFGELILF QLYGNLD*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MGKHPHLHGN EIWGDFGCYV ENTADDGLLW SEYQQEPQRQ LFSNLGILDD LYVDIVSPPF  60
QSYHHEELPE LASSHNENSL LDEDMMENAC AIPLSSLGIL KNYGSGFRRL HGERIKVPSY  120
STTCTQPVPK VNGRKLSTDD ILRLAGKKFI QSSSQRIDGI SALSHPFYTS FLGLSDEETK  180
DVELVQNLLA SAEKVGQQQY NRANKLLSQC DESSSDTGNP VQRVVYYFSE ALREKIDWET  240
GRSTSKGMGK QQLLDYDKAL VSPNLAAIVA FRQKLPFYQV CEFSGMQAIV ERVSGAKKVH  300
LIDLEIRNGM RCTVLMQALA GRSECPIELL KITAVATKSK SKLEETGERL MCFANSMNLP  360
FSFSVIMVSD MLDLKDDLFD LEAEETVAVN ATCSLRSLLA RPDRLETLMR VLRNINPCIV  420
VVTETEANHN SPFFVNRFIE ALFSYGAVFD CLEDCMDRSD PNRKISESTY ICPAILNIVA  480
AEGEERIFRH VNISVWRTFF ARFGMVEEEL STSSLYQANL FAVLIGANPY IVTWRLSRGA  540
NYFARLDEVE TDLTISCLFQ AKPIDRKLAS GSSSCTSDMN GKCLLLGGRE HRFLLSASKS  600
EQMETGSPNA GCSRCSQLNW NHSAVHNFNF LCENEALAPK KDDFGELILF QLYGNLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-30	184	521	4	339	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028060869.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2R6PJJ8	0.0	A0A2R6PJJ8_ACTCH; DELLA protein (Fragment)
STRING	EMJ25971	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-48	RGA-like 2