PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn102881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 600aa    MW: 67029.3 Da    PI: 4.7447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn102881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.38.4e-882255971374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfsh 95 
                 lv+ Ll+ Ae v +++  +a++lL++  el+s +g+p+qRl+ yf eAL++++ r ++ +++ +l  ++  + +      ++aal +f++  P+ ++s 
  Achn102881 225 LVQNLLASAEKVGQQQYDRANKLLCQCYELSSDTGNPVQRLVYYFSEALREKIDReTGRTMATSLGEKQLLDLQeaiACPNFAALITFHQQMPFSQVSI 323
                 6899***************************************************44555555554444432222333344455566************ PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 +   qaI e v+++++vH+i ++i+ GlQ   L+qaLa R+e p   l+iT+vg    + + ++eetgerL +fA+++++pf+f++++++++ +l  + 
  Achn102881 324 FPGMQAIIERVAEAKKVHVIELEIKSGLQCTILMQALAGRSECPLeLLKITAVGT---KARSTIEETGERLMSFAQSINLPFSFKIVMVSDFLNLLEDL 419
                 *****************************************7665499*******...56999********************************8888 PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 ++++++E++a+n  + l  +l+++  le     +++++++++P vv v+e ea+hns+ F++rf+eal ++ a fd+le  + r++ +r++ E  ++++
  Achn102881 420 FELEEEETVAINAPYCLWPMLARPDRLER----LMRVLRRINPCVVAVIEVEANHNSPVFVNRFIEALFFFGAYFDCLEDCMDRNDPNRKMSESGYFSP 514
                 8********************88887777....****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n++a+eg+er++rh + + Wr+ + ++G+k+ +ls++   qa+l++++++ +   +++ + ++l++gWk+ p+ svSaW+
  Achn102881 515 TIQNIIAAEGEERIMRHVNISVWRAFFARFGMKEEELSTSSLYQASLVVKNFAcGSSCTLDMDGNCLIIGWKGTPIQSVSAWK 597
                 *****************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.622199576IPR005202Transcription factor GRAS
PfamPF035142.9E-85225597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNEMFPFEHS NFGGFSYEYG SKGFESVEGR NSVKPAHLYG KESRGEKGGT DSFSSDFGFY  60
LENSAEDGLL FSNYQQEHQQ HSVSDFGILD DLYLDMVSLP FQSSLKDTTK ISSFHAEKML  120
LDEPKNEKPC ATPLATLLGI LKNYGSGFRQ LNLVKIRVPS SGTECTKPEP KVGGQKLSIE  180
DVLRLAGEKF IQSSSQGVDD LSVFNHPFGS SFLGLSDDET GDVALVQNLL ASAEKVGQQQ  240
YDRANKLLCQ CYELSSDTGN PVQRLVYYFS EALREKIDRE TGRTMATSLG EKQLLDLQEA  300
IACPNFAALI TFHQQMPFSQ VSIFPGMQAI IERVAEAKKV HVIELEIKSG LQCTILMQAL  360
AGRSECPLEL LKITAVGTKA RSTIEETGER LMSFAQSINL PFSFKIVMVS DFLNLLEDLF  420
ELEEEETVAI NAPYCLWPML ARPDRLERLM RVLRRINPCV VAVIEVEANH NSPVFVNRFI  480
EALFFFGAYF DCLEDCMDRN DPNRKMSESG YFSPTIQNII AAEGEERIMR HVNISVWRAF  540
FARFGMKEEE LSTSSLYQAS LVVKNFACGS SCTLDMDGNC LIIGWKGTPI QSVSAWKFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-372255974375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060869.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PVU90.0A0A2R6PVU9_ACTCH; DELLA protein
STRINGXP_008223345.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-58RGA-like 2