PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn091181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 575aa    MW: 64623.9 Da    PI: 9.1832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn091181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-162192961499
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++l lp +f++ h   +++++ ++ledesg+++e+k+i +k++    l++GW++F+ a++L egD+++F+l++ ++f  +v v+r+
  Achn091181 219 KLLGLPMTFCKLHL--PRKDMPIVLEDESGEQFELKFIADKTG----LSAGWRKFAAAHKLVEGDVLIFQLVEPNKF--KVYVVRA 296
                 4689******8885..457888***************888888....***********************9987777..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.169206297IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-18213297IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-14217297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16219297IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-13220295IPR003340B3 DNA binding domain
CDDcd100174.01E-18221295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAATMSQWWW ISVDGSGRRC ARVMAMKRER RNQEKESDNR RLLLTRSSES VNEGLLVAPE  60
MKQSEGLDVD TSNNHHDCAE EGVKKEQSSE WPSSEQSIKS GKDDLTLAQF SKAAPRSPSP  120
SSTVSLSTLS LSHGKRKKKP KEMHDDFCYQ FRKRKKATKP CNPISKHAVS DHAGKPMSCK  180
QEKTSTNRLH SPVEVKTPTM IRAEEIKSSL GSEFPSFAKL LGLPMTFCKL HLPRKDMPIV  240
LEDESGEQFE LKFIADKTGL SAGWRKFAAA HKLVEGDVLI FQLVEPNKFK VYVVRANDLT  300
EVDGALGLLN LDAHIKQSDT GKDDADNTEI APNNKKRKRL KTLPLAVVKK KKKMGLPKSV  360
QNSIQSVKQF ENDSEEVGSE VLAGPRLSGS AVRFRDVKSF TDFNILIDGL CIDSELPEHI  420
RVKYYALCCS KNTFIHARLV RGLNSKLVAG IICETVNIAD AIRACKLTTS RDEYLIWEKT  480
LKSFELMGMS VGFLRARLRY LLNLAFESDD APDARRYVEA KSGKGRAEDE IRDLEAKLVE  540
LKHTSEKFCA DIESLKSKAE RYEHKFQEEV DAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155RKRKK
2334352KKRKRLKTLPLAVVKKKKK
3336352RKRLKTLPLAVVKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106376.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2R6RL910.0A0A2R6RL91_ACTCH; B3 domain-containing protein
STRINGXP_009803081.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-30B3 family protein