PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn090761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 269aa    MW: 29908.6 Da    PI: 7.4775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn090761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16187221135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Achn090761 187 CWHCLAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 221
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-15181231IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-14181218IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.503181217IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-15183244No hitNo description
CDDcd002021.45E-11186234No hitNo description
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
PfamPF003202.5E-14187221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEAVLDPGAR FRVEDLLNFS LDVGEEDDDD EKDQKTPSSY SLESSNPHSH DPDDHQSLSL  60
PEFAEEELEW LANKDAFPAV ETCLDILPGN PGLVLNHHSP VSVLENTTTT STSNSTTMTS  120
CCGGRILAPV HYPVKARSTR QRRRRCSFSD LPSQQWWGWA KENIKNSKNK FRAAGPPNAA  180
AKIGRRCWHC LAEKTPQWRA GPMGPKTLCN ACGVRYKSGR LVPEYRPASS PTFSSLLHSN  240
SHRKVIEMRR QKQMGEMVLN EACGYIVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028113026.11e-107GATA transcription factor 1-like
SwissprotQ8LAU92e-47GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2R6R8Z80.0A0A2R6R8Z8_ACTCH; GATA transcription factor
STRINGXP_009767386.17e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-47GATA transcription factor 1