PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn086751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 408aa    MW: 45918.4 Da    PI: 8.3541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn086751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-091437225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                ++++C+f+++ G C++GdrC++ H
  Achn086751 14 DRVNCPFYFKIGACRHGDRCSRLH 37
                6899******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1121240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00651339IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-71437IPR000571Zinc finger, CCCH-type
PRINTSPR018483.2E-141837IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.2E-143757IPR009145U2 auxiliary factor small subunit
SMARTSM003560.38107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.836107134IPR000571Zinc finger, CCCH-type
PfamPF056338.7E-17296391IPR008511Protein BYPASS-related
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP TISPTLLLSN IKGWTCVECE  60
CTDFLDLLSR VLSNLLPRCR CLLQMFATIY CTFQWNPIIV DFSPVTDFRE ATCRQYEEDI  120
CNRGGYCNFM HLKKISRELR RQLFGKGRRR HSRSPPRQRN YEDRPQGGRG SVCDLTCFQS  180
FAGSGIPASR IEPHVLMAAY NDICIQAIAD TRLELLSATL IFSFLSSLTS IVPYLDHSMH  240
EFFNIPQFLS PLFLVSVPLQ TEHLPKHCDC LSDLVLPQSF STITTAQVSS GDVIAVGTLC  300
SIAWFCKLLD AFLCCKAEFK AVLVMGCKFA SCATALSSYQ LEKALDVSSA IAYHVELVRH  360
LQELAQIAVF TLKQLPIRVG QVRRAKMLST HYLALWLSVN RTTTGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-3211431179Splicing factor U2AF 23 kDa subunit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.19e-28C3H family protein