PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn086291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 512aa    MW: 56892.9 Da    PI: 5.0239
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn086291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-351112022102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++i++d++l+ +isw ++g+sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF+++sF +gkk ll++i+
    Achn086291 111 FLSKTFDIVDDPNLDPIISWGSRGESFVVWDPVEFARLVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANESFLQGKKYLLKSIQ 198
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    Achn086291 199 RRKS 202
                   **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-54107200IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.19E-34107200IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-35108200IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.2E-18111134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-30111200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-18149161IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340150174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-18162174IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSPDDKPPFS HSKSPSYSSC LPGSEPESSI IPPASSSSAQ FKSGFSLIPT KFSGSSSFSS  60
SFIPQFSKFD SYPDEPELKS PLIEEYISTE VENLGVPQPL ESLQGIPIPP FLSKTFDIVD  120
DPNLDPIISW GSRGESFVVW DPVEFARLVL PRHFKHNNFS SFVRQLNTYG FRKIDTDKWE  180
FANESFLQGK KYLLKSIQRR KSPQGSQIGI HVASSAELGK AGLEGELERL RREKSLMMQE  240
VVELQQQHRG TVQHIEAVNK KLQEAEQRQK QMVSFLAKLF LNPVFLERLR QKDQPVITSP  300
RTIRKFLKHQ QHEPPKLQSS TEGQIAKYRP ELGNHTINPS VFHIPDFPLQ DTVVNLCSKS  360
EESPVCELLN SQGQVSEGIS SLGNENPLFK GKSVVIPQEL ASFPDDLTKE KNFPEILSPG  420
IECIVKQEDI CSFGFEAGAG MSSSSNELWG NLGNYDVLDF GSSLSDIWDL GFLQAPESSG  480
VGKWPGDESP FDELDSQLGQ PKDGSSKKPD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2310820017120Heat shock factor protein 1
5d5u_B3e-2310820026129Heat shock factor protein 1
5d5v_B3e-2310820026129Heat shock factor protein 1
5d5v_D3e-2310820026129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107676.10.0heat stress transcription factor A-3
TrEMBLA0A2R6RXZ90.0A0A2R6RXZ9_ACTCH; Heat stress transcription factor A-3 like
STRINGXP_006481889.11e-158(Citrus sinensis)
STRINGEMJ040671e-158(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-93heat shock transcription factor A3