PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92358.6 Da    PI: 7.0241
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18106163457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn081891 106 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 163
                 5789****************************************************97 PP
2START158.35.8e-502314382204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l++++ 
  Achn081891 231 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYTQI 328
                 7899******************************************************.7777777777***********999999999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vRae lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+   ++
  Achn081891 329 YAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNaaaASQFVRAEILPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKGVAQ 427
                 **********************************99999999999****************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  Achn081891 428 KMTIAALRYIR 438
                 ******99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.1E-15102168IPR001356Homeobox domain
CDDcd000866.22E-16105165No hitNo description
SuperFamilySSF466894.11E-16105167IPR009057Homeodomain-like
PfamPF000467.5E-16106163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-18107163IPR009057Homeodomain-like
PROSITE profilePS5007115.127108164IPR001356Homeobox domain
CDDcd146862.55E-6157196No hitNo description
PROSITE profilePS5084825.976221449IPR002913START domain
CDDcd088752.73E-71225441No hitNo description
SuperFamilySSF559617.14E-35230442No hitNo description
SMARTSM002344.6E-42230440IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-19230416IPR023393START-like domain
PfamPF018521.3E-47231438IPR002913START domain
PfamPF086701.1E-43704836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MREWDEVVVG GAQSPLERHQ PIKAMSIVLD NFSFVEIGVV SPNPQAKNSR IFLFNQVRPF  60
NFLTSRGRLY LGKYSNLSCE ITMMMTQQHR ESSSESINKH FDAGKYVRYT AEQVEALERV  120
YAECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM  180
NKLLMEENDR LQKQVSHLAS AANTDASCES VVTTPQHSLR DANNPAGLLS IAEETLAEFL  240
SKATGTAVDW VQMPGMKPGP DSVGIFAISH SCSGVAARAC GLVSLEPTKI AEILKDRPSW  300
FRDCRSLEVF TMFPAGNGGT IELIYTQIYA PTTLAPARDF WTLRYTTSLD NGSLVVCERS  360
LSGSGAGPNA AAASQFVRAE ILPSGYLIRP CEGGGSIIHI VDHLNLEAWS VPEVLRPLYE  420
SSKGVAQKMT IAALRYIRQI AQETSGEVVY GLGRQPAVLR TFSQRLSRGF NDAVNGFNDN  480
GWSIMNCDGA EDVIVAVNST KNLCATSSLS TSLSLVGGIL CAKASMLLQN VPPAVLVRFL  540
REHRSEWADF NVDAYSAAAL KASSFAYPGM RPTRFTGSQI IMPLGHTIEH EEMLEVIRLE  600
GHSLAQEDAF VSRDIHLLQC DTRDNLTRHR TLDLTSSLEV GPATKQGSGD ASSCHNMRSV  660
LTIAFQFPFE NSLLDIIAAM ARQYVRSVIS SVQRVAMAIS PSGYHLGTEL LRTDSDGGDS  720
VLKSLWHHPD AILCCSLKSL PVFIFANQAG LDMLETTLVA LQDITLDKIF DETGRKVLFS  780
EFAKIMEQGF GCLPAGICMS TMGRHISYEQ AIAWKVLAAE EGTVHCLAFS FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072265.10.0homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2R6PQ330.0A0A2R6PQ33_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]