PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn081581

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HSF

Protein Properties

Length: 343aa MW: 37483.3 Da PI: 4.4097

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn081581	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	72.1	1e-22	89	141	9	61
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 +++d++++++isw+++g++fvv++++efa+++LpkyFkh+nf+SFvRQLn+Y Achn081581 89 LVDDPSIDDVISWNDDGSTFVVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYR 141 789*************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00056	7.9E-10	82	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	7.2E-16	89	230	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.7E-19	89	141	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.08E-21	89	141	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-22	89	143	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.9E-10	120	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-10	133	145	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEGLLKRIMR FMNHIELTIE HQGETRINDD GSLSPARGRF EDSTVDAKHA EAMSSALKEV 60 ASSSGKNSQL SGGWTSSDDD ADPMDQDGLV DDPSIDDVIS WNDDGSTFVV WNPTEFARDL 120 LPKYFKHNNF SSFVRQLNTY RRKVAAPAAA VAVPLMVAAL PAPPAPQGTG SPSNSGEEQV 180 ISSNSSPANA PTLCRETSFG STTTELVDEN ERLKKENMQL NKELSQMKNL CNNIYALMSN 240 YTGNRPESGS QAAKPLDLMP PKQAGDEADG KPEDATRLFG VSIGAKRLRE DEDEAAEQHE 300 ELQLQLGGVE VKSEPFDHRN AGDDEETPWL RQCNPTNQRV CN*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEGLLKRIMR FMNHIELTIE HQGETRINDD GSLSPARGRF EDSTVDAKHA EAMSSALKEV  60
ASSSGKNSQL SGGWTSSDDD ADPMDQDGLV DDPSIDDVIS WNDDGSTFVV WNPTEFARDL  120
LPKYFKHNNF SSFVRQLNTY RRKVAAPAAA VAVPLMVAAL PAPPAPQGTG SPSNSGEEQV  180
ISSNSSPANA PTLCRETSFG STTTELVDEN ERLKKENMQL NKELSQMKNL CNNIYALMSN  240
YTGNRPESGS QAAKPLDLMP PKQAGDEADG KPEDATRLFG VSIGAKRLRE DEDEAAEQHE  300
ELQLQLGGVE VKSEPFDHRN AGDDEETPWL RQCNPTNQRV CN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-14	89	145	36	93	Heat shock factor protein 1
5d5v_B	6e-14	89	145	36	93	Heat shock factor protein 1
5d5v_D	6e-14	89	145	36	93	Heat shock factor protein 1
5hdg_A	6e-14	89	144	17	73	Heat shock factor protein 1
5hdn_A	6e-14	89	144	17	73	Heat shock factor protein 1
5hdn_B	6e-14	89	144	17	73	Heat shock factor protein 1
5hdn_C	6e-14	89	144	17	73	Heat shock factor protein 1
5hdn_D	6e-14	89	144	17	73	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088645.1	1e-106	heat stress transcription factor B-2b-like
Swissprot	Q9SCW4	2e-65	HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBL	A0A2R6RSV2	1e-162	A0A2R6RSV2_ACTCH; Heat stress transcription factor B-2a like
STRING	EMJ19939	4e-85	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2182	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	3e-61	heat shock transcription factor B2A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]