PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 683aa    MW: 75208.4 Da    PI: 6.9734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056384223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                kC++C++ F ++ n++rHir+H
  Achn081281 63 KCEKCSREFCSPINYRRHIRVH 84
                7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4946284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKSLEGNESI DTFIRQAIGK EPSVSYPRTV EPPVQWIQLL QALDQPDLPG WPLLSPLKVQ  60
MQKCEKCSRE FCSPINYRRH IRVHRRSLNV DKLSLDEAKE IVSFKDVTLE EVTGPSIVKT  120
LTALVRKAGF CPLPQAYVRA GSALLDVIQA RPSRLPVSSQ ELFSILDDAS EKTFLCAGTA  180
ESMQKYVFDG DAGKIGLEMK NLVACTSFLL EQKLVKAWVA DKDAEALRCQ KQLVEEEEAA  240
QKRQAELLER KRQKKLRQKE QKVKEQAKEE KADFKDVTAD TLDSPPSVGT SSTLIESESS  300
SNALETPPDH ASTLHEPVQM SITVGDADTE AQYGFSCEHS DSGTFPNIDR RTEQGNGRRH  360
LVISRWQVPK SQKSGRNGFH SSQNYQVLKL EPTQKHGAPG DPRAAPVVNG NKVWTRKPKS  420
ENDGESLKSR LLKEVVNQTD QNKNSEVMIG SISVTLENCT AQQQGDGLPE TQEHRSTEHA  480
MSKNSGQEKP TKTDSVQGGL NKSTVKFWRP VSRHETRGPM PVQSGSGESG EDVITGMGND  540
RMGASESCLR SCGLGDSGHE SGNNSNPLVN GSLHPDSLLF YSHAAKAFLA QRWKEAIASD  600
HVNLVLASEL EPPGCPETES DDQVVTQSSD PHRRSVLGNA ENLLASVGDF DSSTTETVKA  660
KFRIKPEKGI TRKYIPKHRA IT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255ERKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516341e-50AM451634.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X116320.11, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117678.10.0uncharacterized protein LOC114315278
TrEMBLA0A2R6RSV80.0A0A2R6RSV8_ACTCH; Receptor-mediated endocytosis protein
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-123C2H2-like zinc finger protein