PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn080521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 470aa    MW: 52115.4 Da    PI: 6.0453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn080521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.5e-31191312128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkge 98 
                 ppG+rF Ptd elvv+yL +kv +k+l+  ++i  ++iy+++P++L               ++++k+++g r+nr  at++gyWkat +dk+v+  +++
  Achn080521  19 PPGYRFVPTDTELVVHYLYNKVYHKPLPG-NMIIAINIYDFHPQQLA--------------RTERKHPNGVRPNRaiATRDGYWKATTSDKPVMY-ENN 101
                 9***************************9.8899************6..............467899********76699***************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vg k +L fy+g+ ++g+kt+W mhey++
  Achn080521 102 IVGYKMSLDFYEGEPRDGRKTEWKMHEYKI 131
                 9***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4016155IPR003441NAC domain
PROSITE profilePS5100534.37818156IPR003441NAC domain
PfamPF023653.9E-1919131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDKGKSIITE LEGDDERIPP GYRFVPTDTE LVVHYLYNKV YHKPLPGNMI IAINIYDFHP  60
QQLARTERKH PNGVRPNRAI ATRDGYWKAT TSDKPVMYEN NIVGYKMSLD FYEGEPRDGR  120
KTEWKMHEYK ILPTRKSNAT DSMKLDDLVL SKIYSTSKKA KDVQQNQRTE LAAENANQDS  180
RPLGVSNGMN MDGHHMPLVG LSMSLPELSR VQIQNPSLLS GGDNDQLYNL TYLNELINGS  240
SHDNFSSSLG AHMLHTDSYH MPLVGPSMSF SEFSGVQVSN PSLPSGGNDQ LNNLMYLEGA  300
INGSSHDNCP SSLGAHMMNI DGHHMPLVGP SMSFSKFSRV QVSNPSLPSG GNDQLNNLMY  360
LEGAINGSSH GNCPISLGAH MMNIEERSSP NLLPHNSERH RFMLEPVYDH TSPLTDRSMS  420
FSELSKVQIP NSSLLSSCDN DQLMNDLMYL EGVLNDSSHD NCPSSLVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-281816117170NO APICAL MERISTEM PROTEIN
1ut4_B1e-281816117170NO APICAL MERISTEM PROTEIN
1ut7_A1e-281816117170NO APICAL MERISTEM PROTEIN
1ut7_B1e-281816117170NO APICAL MERISTEM PROTEIN
3swm_A1e-281816120173NAC domain-containing protein 19
3swm_B1e-281816120173NAC domain-containing protein 19
3swm_C1e-281816120173NAC domain-containing protein 19
3swm_D1e-281816120173NAC domain-containing protein 19
3swp_A1e-281816120173NAC domain-containing protein 19
3swp_B1e-281816120173NAC domain-containing protein 19
3swp_C1e-281816120173NAC domain-containing protein 19
3swp_D1e-281816120173NAC domain-containing protein 19
4dul_A1e-281816117170NAC domain-containing protein 19
4dul_B1e-281816117170NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-37NAC-like, activated by AP3/PI