PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn078551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 149aa MW: 17573.4 Da PI: 4.9672

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn078551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38	5.4e-12	49	137	1	72
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek 72 k+Y++Y ++ GF +r+++s+k +r++ t+ fvC+keg +++ +k +k++r+ ++ + gCka+l++k++k Achn078551 49 KYYEDYDRQNGFWIRTRTSYKGqNRSNDETSVLFVCTKEGMYAPKAEKdgveenddrveddkvlPNKRKRSCSTAKRGCKAHLRIKRDK 137 69*************99998556677899********999999*********9988999999999*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-9	49	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MNYCRFGMED SFEFDDFEVE DLHASNNDVE KLEAQSSGMS FETIEETRKY YEDYDRQNGF 60 WIRTRTSYKG QNRSNDETSV LFVCTKEGMY APKAEKDGVE ENDDRVEDDK VLPNKRKRSC 120 STAKRGCKAH LRIKRDKWTT TVYFLFLY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6R5G6	3e-50	A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-06	FAR1-related sequence 7