PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn078141

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TALE

Protein Properties

Length: 588aa MW: 64536.9 Da PI: 7.4281

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn078141	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3e-09	356	393	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Achn078141 356 FEHflHPYPKDSDKHILAKQTGLTRSQVSNWFINARVR 393 554459******************************88 PP
2	BELL	120.2	9e-39	220	291	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq+lq kkakL+s+l+eV++rY+qy++q+q+v+ssFe++ag+gsak+Yt++Al++iS++FrcLkdai+ qi Achn078141 220 QRQDLQTKKAKLVSMLDEVEQRYRQYHHQMQIVASSFEQAAGVGSAKSYTAFALQTISKQFRCLKDAITTQI 291 699*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.1E-60	148	289	IPR006563	POX domain
Pfam	PF07526	9.8E-49	153	288	IPR006563	POX domain
PROSITE profile	PS50071	11.936	334	397	IPR001356	Homeobox domain
SMART	SM00389	1.2E-8	337	401	IPR001356	Homeobox domain
CDD	cd00086	7.11E-12	337	398	No hit	No description
SuperFamily	SSF46689	8.98E-17	338	404	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-28	340	403	IPR009057	Homeodomain-like
Pfam	PF05920	1.2E-17	354	393	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MATYYHGGSE IQADGLHTLY LMNPNYLGYS DTQPPPPSQS NMLFLNSTAS VSHAPPPQNH 60 HFVGIPLSTV GSANTDDPNR PSVHEISRFH HNLWANASGN HPDILASGLS LSLSSQRPTY 120 RSLAGEREFS GQAVATGGSS LSVPNGICGA QGVILNSKYL KAAQEVLDEV VNVGMGIKTE 180 TGEGMREKGK VSRESMAGSG DGLSGGETRS KGGAELTTAQ RQDLQTKKAK LVSMLDEVEQ 240 RYRQYHHQMQ IVASSFEQAA GVGSAKSYTA FALQTISKQF RCLKDAITTQ IKATSKSLGE 300 DESLGGKVEG SRLKFVDHQL RQQRALQHLG MIQHNAWRPQ RGLPERAVSV LRAWLFEHFL 360 HPYPKDSDKH ILAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEMKDH EQNGSDQSNT 420 SNGEPNKESD PKSADPQENN TFMGSSSEIE ELIVQRSPKK PRSYDKQSSP SSILSMDHMD 480 TKPRETTTSL GNGFGTYPIS DIGRFDHPNR LLTRYQGNSV SLTLGLPHCE NPSLSGTQQS 540 FFPMGPVETH YGSMNASQSS QTNAVYESIS IQNRKIFASQ LLPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MATYYHGGSE IQADGLHTLY LMNPNYLGYS DTQPPPPSQS NMLFLNSTAS VSHAPPPQNH  60
HFVGIPLSTV GSANTDDPNR PSVHEISRFH HNLWANASGN HPDILASGLS LSLSSQRPTY  120
RSLAGEREFS GQAVATGGSS LSVPNGICGA QGVILNSKYL KAAQEVLDEV VNVGMGIKTE  180
TGEGMREKGK VSRESMAGSG DGLSGGETRS KGGAELTTAQ RQDLQTKKAK LVSMLDEVEQ  240
RYRQYHHQMQ IVASSFEQAA GVGSAKSYTA FALQTISKQF RCLKDAITTQ IKATSKSLGE  300
DESLGGKVEG SRLKFVDHQL RQQRALQHLG MIQHNAWRPQ RGLPERAVSV LRAWLFEHFL  360
HPYPKDSDKH ILAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEMKDH EQNGSDQSNT  420
SNGEPNKESD PKSADPQENN TFMGSSSEIE ELIVQRSPKK PRSYDKQSSP SSILSMDHMD  480
TKPRETTTSL GNGFGTYPIS DIGRFDHPNR LLTRYQGNSV SLTLGLPHCE NPSLSGTQQS  540
FFPMGPVETH YGSMNASQSS QTNAVYESIS IQNRKIFASQ LLPDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	343	401	5	63	Homeobox protein Meis2
3k2a_B	3e-16	343	401	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275098.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-130	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2R6PEK6	0.0	A0A2R6PEK6_ACTCH; BEL1-like homeodomain protein
STRING	VIT_06s0009g00410.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-119	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]