PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn076481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 238aa    MW: 26031 Da    PI: 5.0252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn076481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1780130155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  + +Wv+e+r+p   +k++r++lg++ tae+Aa+a++ a ++l+g
  Achn076481  80 PVYRGVRRRN-TDKWVCEVREP---NKKTRIWLGTYPTAEMAARAHDVAVLALKG 130
                 68*****887.9******9998...347**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1380130IPR001471AP2/ERF domain
PROSITE profilePS5103221.70781138IPR001471AP2/ERF domain
SMARTSM003802.2E-2681144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3081140IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2081140IPR016177DNA-binding domain
CDDcd000181.24E-2782140No hitNo description
PRINTSPR003675.0E-88293IPR001471AP2/ERF domain
PRINTSPR003675.0E-8104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDASNPFFDL FPNRSSFYST SSIAETSVSP SNNFQSTAEA SASTLSESDC THSEESDIIL  60
ASSRQKKRAG RKKFKETRHP VYRGVRRRNT DKWVCEVREP NKKTRIWLGT YPTAEMAARA  120
HDVAVLALKG RSACLNFADS VWRLPVAAST DANDIRRAAA SAAAAFRPAL EGTVEMAEDE  180
NRAAENVCFM DEEALFDMGG LALGMAELPL LSPSPRLGSG FSWDDGESDI EVSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12791371271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107637.13e-90dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ934e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A4P1LTT11e-172A0A4P1LTT1_ACTDE; C-repeat binding factor 5
STRINGVIT_02s0025g04460.t013e-77(Vitis vinifera)
STRINGXP_010278524.13e-77(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.19e-58dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]