PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn072221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 301aa    MW: 33761.2 Da    PI: 10.7254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn072221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014225247123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F+    L  H+r+H
  Achn072221 225 HECSICGLEFPVGQALGGHMRRH 247
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010236.5E-16161IPR001705Ribosomal protein L33
SuperFamilySSF578299.16E-14361IPR011332Zinc-binding ribosomal protein
HamapMF_0029416.048765IPR001705Ribosomal protein L33
PfamPF004718.3E-18961IPR001705Ribosomal protein L33
PROSITE patternPS0058203352IPR018264Ribosomal protein L33, conserved site
SuperFamilySSF576674.92E-8179247No hitNo description
PfamPF139129.3E-12180205IPR007087Zinc finger, C2H2
SMARTSM003550.16181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
PfamPF139122.1E-10224249IPR007087Zinc finger, C2H2
SMARTSM003550.14225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKGKDVRVT VILECTSCVR NGVNKASKGI SRYITQKNRR NTPNGLELRK FCPYCYKHTI  60
HGLKNPIILK IKSKYLTTLY SIWRATWDMK RNGRGISLWK RRPNLSLYKT PPMTPPNTLP  120
SLKQVIFPQT RTTTREHSTP NTMTVMKRRR EEEAVEALAM ANCLMLLSHV EGAASASHRV  180
FTCKTCNREF PSFQALGGHR ASHKKLRPAA DGEFLHVSPA KQKTHECSIC GLEFPVGQAL  240
GGHMRRHRGG AIVREGTEAA EGTAVEDRNG RKGVWGLDLN LTPYENDVKF GKMIPPWLIA  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v61_B34e-31162162Ribosomal Protein L33
5mlc_34e-3116216250S ribosomal protein L33, chloroplastic
5mmi_24e-3116216250S ribosomal protein L33, chloroplastic
5mmm_24e-3116216250S ribosomal protein L33, chloroplastic
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2972425e-91KP297242.1 Actinidia chinensis isolate AC-2 chloroplast, complete genome.
GenBankKP2972435e-91KP297243.1 Actinidia chinensis isolate Ac-4 chloroplast, complete genome.
GenBankKP2972445e-91KP297244.1 Actinidia deliciosa isolate AD-4 chloroplast, complete genome.
GenBankKP2972455e-91KP297245.1 Actinidia chinensis isolate AD-6 chloroplast, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094278.13e-56zinc finger protein ZAT12-like
TrEMBLA0A2R6P7Q21e-112A0A2R6P7Q2_ACTCH; Zinc finger protein
STRINGXP_010043583.13e-48(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-30C2H2 family protein