PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 395aa    MW: 44550.1 Da    PI: 7.0372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-112132871484
                 T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 + l lpk+ +++h        +  +++   l ++d ++++W  k+     sg+++  +GW++Fv+++++++gD + F+ 
  Achn069381 213 RPLPLPKEEVKKHfaavripvS--SHRMERLYFTDAWNKEWCWKF--MFLSGKHMVMDGWEGFVNEHKVDAGDAIRFYK 287
                 56889*********99999642..335557***************..66666788889*******************92 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-1164164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-1167159IPR015300DNA-binding pseudobarrel domain
CDDcd100179.41E-867157No hitNo description
PROSITE profilePS508639.55968177IPR003340B3 DNA binding domain
SMARTSM010190.003769177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-13191292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-11193291IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-10196295No hitNo description
SMARTSM010190.12198308IPR003340B3 DNA binding domain
PfamPF023621.0E-7213291IPR003340B3 DNA binding domain
PROSITE profilePS508638.698241308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MCSLMIGPRG AIQEQEEDKA SLDYASMEVH AFSSDPTESD TDLEADAKTG DPSSSPTKVN  60
EFNFRQFLFE IQLTPTDVEK GGLFIPVETA LDFFPPLTAS LQRIYYEKIK ISSPTETRAW  120
SMAITYDPEE SLFLINSRKW QQFAHHHGFK AGDIIRFFKP FPRAENTHFL IEHVKKADEE  180
GTSSTVVVPE FEEENFLFQK QLTLYEVRNL IKRPLPLPKE EVKKHFAAVR IPVSSHRMER  240
LYFTDAWNKE WCWKFMFLSG KHMVMDGWEG FVNEHKVDAG DAIRFYKFTE NRKLHPERHF  300
LIQHVKKANV QVVNPPTAEH VAGTSTNPTA GQPGTGARNE ENRGVENTNA RIEGGQGGGS  360
NQRCGSLGGG NKRGGGQSGG RREKKSGFRN CCMA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.15e-07ethylene response DNA binding factor 3