PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn065621

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CPP

Protein Properties

Length: 345aa MW: 38259.4 Da PI: 7.9005

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn065621	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.4	2.9e-13	261	298	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k+CnCk s+Clk YCeCfaa+ +C+++C C++C N+ Achn065621 261 DKRCNCKESSCLKCYCECFAARMYCGKNCACQGCLNSL 298 699*********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.2E-10	259	300	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	15.823	260	344	IPR005172	CRC domain
Pfam	PF03638	8.7E-10	262	297	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGQSVFGLLR GCERWGLGRK GATAAEGCEN FGLRSGTAHK DEFNCLFQFF PERLQPIHGY 60 EDCGEIAEET SNELVKNMAL LGLGLKQKNA VMRGENHHDM QRHCHRFEDV QQNIMENNPG 120 LKMLSWQPVN LTQPITSTIS PRNIRNHRSE VSKPSDTGLQ VNSIANAVPI GFGTSGSMKP 180 TEKSHVNVQG RYHRSMLLNK SEKLSTSCED GSHETQASVA TSSLALQSLQ MVESSNDPAL 240 LKPISTYLLK FYKKKTLTTN DKRCNCKESS CLKCYCECFA ARMYCGKNCA CQGCLNSLDY 300 EDTVEGTVED IKSQNKHAFE PKIENLMVIA QGHTVYALGK FSKT*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGQSVFGLLR GCERWGLGRK GATAAEGCEN FGLRSGTAHK DEFNCLFQFF PERLQPIHGY  60
EDCGEIAEET SNELVKNMAL LGLGLKQKNA VMRGENHHDM QRHCHRFEDV QQNIMENNPG  120
LKMLSWQPVN LTQPITSTIS PRNIRNHRSE VSKPSDTGLQ VNSIANAVPI GFGTSGSMKP  180
TEKSHVNVQG RYHRSMLLNK SEKLSTSCED GSHETQASVA TSSLALQSLQ MVESSNDPAL  240
LKPISTYLLK FYKKKTLTTN DKRCNCKESS CLKCYCECFA ARMYCGKNCA CQGCLNSLDY  300
EDTVEGTVED IKSQNKHAFE PKIENLMVIA QGHTVYALGK FSKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-16	Tesmin/TSO1-like CXC domain-containing protein