PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn062471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 263aa    MW: 28950.5 Da    PI: 6.7805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn062471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19130180255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  Achn062471 130 HFRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAVAYDKAAYRMRG 180
                 69*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-32129189IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22130190IPR016177DNA-binding domain
PfamPF008476.0E-13130180IPR001471AP2/ERF domain
CDDcd000182.52E-30130189No hitNo description
SMARTSM003801.1E-35130194IPR001471AP2/ERF domain
PROSITE profilePS5103223.92130188IPR001471AP2/ERF domain
PRINTSPR003672.7E-10131142IPR001471AP2/ERF domain
PRINTSPR003672.7E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDEKTSQKIQ NQTDMYGQEC TPVIFPASSS FEFPVYHRSS SFSSLIPCLT ETWGDLPLKV  60
DDSEDMVIYG LLRDAVSAGW TPFNLTANDV KPEPIDEFEP ATTTSAAQLV ESPVTEVQTI  120
AAAARPKGRH FRGVRQRPWG KFAAEIRDPA KNGARVWLGT YETAEEAAVA YDKAAYRMRG  180
SRALLNFPHR IGFDEPEPVR VTSKRRSPEP TSPSSESGSP KRRRKGFAAA KQAELGVERE  240
SSVCQVGCQV RQLPVGEQLL VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-36127195270ATERF1
3gcc_A3e-36127195270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203224KRRSPEPTSPSSESGSPKRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698630.0GQ869863.1 Actinidia deliciosa ethylene response factor 12 (ERF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098589.11e-122ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-118ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2R6RT560.0A0A2R6RT56_ACTCH; Ethylene-responsive transcription factor 2 like
TrEMBLD8VD390.0D8VD39_ACTDE; Ethylene response factor 12
STRINGXP_009765938.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-55ethylene responsive element binding factor 1