PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn061601

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 181aa MW: 20415 Da PI: 7.7919

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn061601	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.9	1.3e-13	12	50	12	50
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 tfskR++ i KKA+EL++ ++ev v i+sstgk y ++ Achn061601 12 TFSKRKAEIVKKASELCTFPGTEVGVFILSSTGKPYSFA 50 9*********************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-6	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-16	10	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.358	12	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-12	12	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MENNHNHVHI NTFSKRKAEI VKKASELCTF PGTEVGVFIL SSTGKPYSFA HPSIESVINR 60 YHDKHPPRND ITTNLGETEY QETIRELNQK YDEVLKQLKV EKAKRLVLDY MENEGISKGG 120 LLKPINQLSL KELQQLDIQI QELQKHVGER EARNEPASSS TIATANPSYA INPFTDGKTK 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-19	AGAMOUS-like 61