PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn053421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 173aa    MW: 20059 Da    PI: 9.1266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn053421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-057193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F ++  L  H++ H
  Achn053421 71 FECQYCSKEFANSQALGGHQNAH 93
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-76798No hitNo description
Gene3DG3DSA:3.30.160.602.8E-66797IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-67095IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0927198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGDEEYSSNS CSKKFKLFGF ELDSHKNGLE TCLKGSFGDE ESVNSSITIS SRNEKFRREN  60
RSTGDKEEKR FECQYCSKEF ANSQALGGHQ NAHKKEKMKK KRLQIEARNS HSFFYYPYFN  120
PYESQISFSR FDHDMSNGYA LNANQFHQGT SLFTVTHVDR SAKNRQNRID RN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359EKFRREN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631292.25e-45PREDICTED: zinc finger protein 5 isoform X2
TrEMBLD7TNK92e-44D7TNK9_VITVI; Uncharacterized protein
STRINGVIT_01s0026g00850.t014e-45(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-13C2H2 family protein