PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn053291

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WOX

Protein Properties

Length: 290aa MW: 32224 Da PI: 6.1348

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn053291	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.6e-20	35	96	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ Achn053291 35 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 96 58***************8678***********************************97 PP
2	Wus_type_Homeobox	113.9	8.2e-37	34	98	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Achn053291 34 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 98 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-11	21	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.511	31	97	IPR001356	Homeobox domain
SMART	SM00389	1.1E-5	33	101	IPR001356	Homeobox domain
CDD	cd00086	6.29E-7	36	98	No hit	No description
Pfam	PF00046	2.2E-17	36	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-7	36	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEFQQQNNQN QQQQQNEDGG SGSSKSTSFL CRQSSTRWTP TTDQIRILKD LYYNNGVRSP 60 SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF TTEIPMQRNG NSTWRSSQED 120 PTYNKYSIIS PGVPSPSSSS TTSSTSPAVV AVGQMGSYGY GSVTVENSFR DCSISAGCSG 180 GGGSIAHNFW VGSDLYNYSP NYPFFDKRKS IEENPTEDEE QEQAPEIETL PLFPMHGDNI 240 SSGFCSLKPQ SNGYYTTPTG WYPPDDGHGS SRTSLELSLN SYTGMSSAD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028106253.1	1e-107	protein WUSCHEL
Swissprot	Q8LL11	2e-96	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A2R6RIT3	1e-166	A0A2R6RIT3_ACTCH; Protein WUSCHEL like
STRING	VIT_04s0023g03310.t01	1e-103	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-40	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]