PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn052721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 326aa    MW: 36600 Da    PI: 8.2862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn052721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.6e-07160182123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cgk F+r  nL+ H+r H
  Achn052721 160 HYCQVCGKGFKRDANLRMHMRAH 182
                 68*******************99 PP
2zf-C2H210.80.0016251274123
                 EEETTTT.EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                 y+C+ C+ k Fs  s+L++H + +
  Achn052721 251 YVCKRCNrKQFSVLSDLRTHEKHC 274
                 9*******************9876 PP
3zf-C2H211.70.00078282298521
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L  H+ 
  Achn052721 282 MCGTTFSRKDKLLGHMA 298
                 6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-6158184No hitNo description
PROSITE profilePS5015712.653160187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-7160186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034160182IPR015880Zinc finger, C2H2-like
PfamPF128740.0019161180No hitNo description
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SMARTSM0035575213246IPR015880Zinc finger, C2H2-like
SMARTSM0035522251273IPR015880Zinc finger, C2H2-like
SMARTSM00355200279303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTINSSSLEP SSGWETHSNS LLYSLSLLKE KLHHLESLVT ILMSPAAKST PIALAAMPTL  60
VQEIMVTSSS MLLSCQQMNM PANTDDDSQN HAQGGGTSPL DVIHVNEERE QQGFYSPDAL  120
DWYSCDASNV KELPCNEATS PKNYDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR  180
AHGDEYKSSA ALTNPMKILN TNEVREGLLP RKYSCPQEGC RWNRKHAKFQ PLKSMICVKN  240
HYKRSHCPKM YVCKRCNRKQ FSVLSDLRTH EKHCGDLRWQ CMCGTTFSRK DKLLGHMALF  300
VGHVPAVSCS VKMGKVEDRG QVEVR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052411.11e-155protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_028101965.11e-155protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-108STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2R6PF390.0A0A2R6PF39_ACTCH; Protein SENSITIVE TO PROTON RHIZOTOXICITY like
STRINGEOY336791e-133(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-103C2H2 family protein