PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn049041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SRS | ||||||||
Protein Properties | Length: 280aa MW: 31178.6 Da PI: 8.6161 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 198.4 | 2.2e-61 | 74 | 213 | 4 | 152 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 g ++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstWv+aakrrerqqqla ++++++ +++++ s r+++ +++ ++++++ le+ Achn049041 74 GCVNCQDCGNQAKKDCPYLRCRTCCKSRGFECQTHVKSTWVAAAKRRERQQQLALLQQHQQDQQQQQMSFRNEN--------PKRQ--RESNTPSGLEV 162 6689**************************************************99777755444443333332........2222..34456778999 PP DUF702 103 sslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152 ++P + +seavfrcvrvss d ++++laYqtav+igGhvfkGiLydqG+ Achn049041 163 GHFPVQYNSEAVFRCVRVSSTYDaDHDQLAYQTAVNIGGHVFKGILYDQGP 213 ********************98846688**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.1E-59 | 76 | 213 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.0E-26 | 77 | 119 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.7E-25 | 164 | 213 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MSGFFSLGGK QEKSTTTNSL FLLRNEEIYN KSFELWQQYY HLHQQKLHQL QEKDLAGPSS 60 DEQYRSRAMR QGGGCVNCQD CGNQAKKDCP YLRCRTCCKS RGFECQTHVK STWVAAAKRR 120 ERQQQLALLQ QHQQDQQQQQ MSFRNENPKR QRESNTPSGL EVGHFPVQYN SEAVFRCVRV 180 SSTYDADHDQ LAYQTAVNIG GHVFKGILYD QGPYGGGESS SRGGGGGGQP LSLTTAVTTA 240 TTAATTSYHQ GVNMLDPSLY SAPLNAFMAG TQFFPPPRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022894528.1 | 1e-102 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 1e-68 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2R6RMN4 | 1e-167 | A0A2R6RMN4_ACTCH; Protein SHI RELATED SEQUENCE like | ||||
STRING | EOY14902 | 1e-92 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 7e-59 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
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