PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn047681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 273aa    MW: 30952.5 Da    PI: 4.5748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn047681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018243261220
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                 +C  Cg+ F ++  L++H+
  Achn047681 243 VCDTCGEDFESRNRLHKHL 261
                 7*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-144396No hitNo description
SMARTSM004519.5E-65286IPR003604Zinc finger, U1-type
PfamPF121718.3E-115580IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003551.95579IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805779IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411242271IPR007087Zinc finger, C2H2
SMARTSM003557242266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEMKREEERE RKREMEREKM ERARAYKEPE WAAVEEEGGE IEEDNEVEEE KMKELYCVAC  60
GKKFKSEKQW KNHEQSKKHK EKVSELREAF HDEENENGER EEEEDGKEEE LVNNRGGCGF  120
ASTDNGIEEL SEQLGGCSQI PKESSDHDKA QSSEEEGFVD IGDDDDGPKG ADDDQASILE  180
AMDDVPVVNE SSDKGDDKKE NSRKVQKQAV DRKGTANKDE NAKSKNSFKG RKQKATSKTS  240
ATVCDTCGED FESRNRLHKH LGDTGHAKLK SR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733971.12e-41DNAJ protein JJJ1 homolog
TrEMBLA0A2R6PCJ82e-76A0A2R6PCJ8_ACTCH; DNAJ protein
STRINGSolyc03g115140.2.13e-29(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.19e-16DNAJ heat shock N-terminal domain-containing protein