PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn046071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 726aa    MW: 84363.1 Da    PI: 8.4324
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn046071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.92.9e-1755141191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 +fY++YA++ GF + ++++k+ +++g+i+ +t  C + gk++ ++k+      + ++t+++Cka+++v+  +dg+ +++ + leHnHel+p
  Achn046071  55 DFYKKYAYNHGFGIITRSTKT-DDDGNIKYYTISCARAGKTKLTRKN---PLLPLPSTKINCKARINVRTFEDGRLCLSGVFLEHNHELSP 141
                 6************98877655.59999****************9988...889************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1455141IPR004330FAR1 DNA binding domain
PfamPF105514.0E-18261317IPR018289MULE transposase domain
PROSITE profilePS509669.507527563IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-5531559IPR007527Zinc finger, SWIM-type
SMARTSM005754.9E-5538565IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MSQLEMENQE VCFDEDTSTR EETREQQLQT TINEEEKVGT PQVGMMFNSI DEVRDFYKKY  60
AYNHGFGIIT RSTKTDDDGN IKYYTISCAR AGKTKLTRKN PLLPLPSTKI NCKARINVRT  120
FEDGRLCLSG VFLEHNHELS PGKSRHFLCN KQLDSWAKRR LDLNDQAGIP LSKNFNSLVV  180
EARGYENLTF GEKECRNYID KARRLRLGVG DAESLYNYFV RMQNQNSKFF YVLDVNEESR  240
VRNIFWADAR SQAIYESFGD VITFDTTYLT NKYDMPFALF VGVNHHGQST LLGCGLLSNE  300
DTETYIWLFK SWLSCMSEVF PEAKHRLCLW HILKKLPMKL GGLAEYRAIK KTLKNVVYES  360
LTPSDFEEGW TKLIAEFKLE GNEWLRYLYL DRKRWVPIFV KETFWAGMST TQRSESMNGF  420
FDGYVHSKTT LKQFVEQYDN ALGSKVEKEK KADFASFNSI IPMITDFHFE KQFQEAYTNE  480
LFKEFQDELR GLIYCNICFV KIEGSISIFQ VKDYAKKKDG SRRKVVYDVL YNEAACDIRC  540
LCHLFEFRGI LCRHTIAVLV DQDVKEVPLR YILTRWRKDI KRKHTYVKSS YDNLSDTKHM  600
KLYNMLCNRF HNIAEIGAET DGNSDILMKI LDDAEEIMLK RKSFCGSSQP NKESSAQDSD  660
ELNHLSKKLH SPLQVRSKGR PPSKRKESKV EQILRSKKKA YTGFGTNTSI YGGIFNDYID  720
LDPKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1679689RPPSKRKESKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772462.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A287I7310.0A0A287I731_HORVV; Uncharacterized protein
TrEMBLA0A287I7770.0A0A287I777_HORVV; Uncharacterized protein
STRINGTraes_1AS_F08B3720F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-121FAR1-related sequence 6