PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn045361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 403aa    MW: 45276.4 Da    PI: 5.135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn045361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-18187236255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp     r  r +lg+++taeeAa+ +++a+ +l+g
  Achn045361 187 KYRGVRRRS-WGKFAAEIRDPM----RrIRLWLGTYDTAEEAAAVYDNAAIRLRG 236
                 8*****887.**********83....46*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-30186243No hitNo description
SMARTSM003801.6E-35187250IPR001471AP2/ERF domain
PROSITE profilePS5103222.682187244IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-20187244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-28187244IPR001471AP2/ERF domain
PfamPF008472.3E-10187236IPR001471AP2/ERF domain
PRINTSPR003675.7E-9188199IPR001471AP2/ERF domain
PRINTSPR003675.7E-9210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKVQNHHLPA IFTLSNQLNP FPVPHYDTTS DQPNVEAPSP IGNMATEKLR KQLREMDQSM  60
SNLWPIKYTE HKSVSKKLIK PSNLKPRKAS SGRKVRDYAS GVQPRVVRIS VTDQDATDSS  120
GDEETEFFGR QRVKRYVNEI SIESAANRRG FIGPNSRTKG LRTGEGIRVK RKGMKKAAAA  180
GWNGSQKYRG VRRRSWGKFA AEIRDPMRRI RLWLGTYDTA EEAAAVYDNA AIRLRGPDAL  240
TNFVTPPLPK DASDVNRTSV SDEESSDESR SLSSPTSVLR FTSLSVEETE PSKPVREDLV  300
QPEPVEGSEE FHDETNFPNQ NVDYLPMDLS FVNDFFNFES PEPIFVDESP CLPNDLLSDD  360
YLSDVFMDSG KDFVSSLTIW QGDDYFQDLG GDFFTSDPLM AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18186243159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097450.11e-108ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6REX10.0A0A2R6REX1_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_16s0050g02400.t014e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-55cytokinin response factor 4