PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn037901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 434aa    MW: 47636.8 Da    PI: 5.2279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn037901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31203261259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Achn037901 203 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 261
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925197263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-31199263IPR003657WRKY domain
SuperFamilySSF1182902.75E-26200263IPR003657WRKY domain
SMARTSM007741.4E-37202262IPR003657WRKY domain
PfamPF031069.0E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MENYQGDLAD IVRAMSGGGG SGGFSGEVPV PEWQFPVDPV NYASELVDDF GDPFSTMRDP  60
LLHELDMPST GFFSSNKSTI MMTNSIGDTA TSFGSRGGGD AEVRRPCNNI FSTMLQISPN  120
AKILPISLCD STVGIKNSSL LPKDMISTAN TSKSCLVENS GVQISSPRNT GIKRRKSQAK  180
KVVCIPAPAP ANSRPSTGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV  240
ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSQPPKN NSGSKNSSSH AQKETTNMKE  300
EHKERGENTD NVTSSIVRTT TSGGQDVKEE EMELDLIHDK QMLDMDEEER EREREIGLLS  360
YRPALPESNH DDFFADLGEI EADPLNLLFT QGFSVDTQER EGNRALDPFT SLFDWTPNNT  420
SNTSFGDQSK RGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25177264380Disease resistance protein RRS1
5w3x_D2e-25177264380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276123e-93KT827612.1 Manihot esculenta WRKY transcription factor 37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269170.11e-169PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A2R6R1V60.0A0A2R6R1V6_ACTCH; WRKY transcription factor 14
STRINGXP_010247841.11e-144(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.13e-93WRKY DNA-binding protein 14