PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn036931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 265aa    MW: 30288 Da    PI: 10.141
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn036931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.71.5e-1325108186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Liea  ++  +l+rg+l++++W+ev++++      ++ +r+ +qCk++ + l+k++k +k           st++++++l+
  Achn036931  25 CWSEGATETLIEAWGDRYLQLNRGNLRQKDWKEVADAVnarrNTTKPRRTDVQCKNRVDTLKKKFKLEKSKPVP------STWSFYHRLD 108
                 7*************************************98655566699*****************99877664......68******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2523110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNNNHNNNVT SRPHHGGGSG GREDCWSEGA TETLIEAWGD RYLQLNRGNL RQKDWKEVAD  60
AVNARRNTTK PRRTDVQCKN RVDTLKKKFK LEKSKPVPST WSFYHRLDHL IGTTANAAVT  120
PSNKKTKPST TTVTLTVKST PKPNPNPSPQ GVVYLNSSGS NESSLRGWGG RVDDDVRKHS  180
RMDYVDFSED SAYKELARAI LRFGEIYERI ESSKQQQMME LEKQRMEFTK DLEFQRMNMF  240
MESQLELEKM KRPTKYAPAK GEFP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151555.11e-98PREDICTED: trihelix transcription factor ASIL2-like isoform X2
SwissprotQ9LJG81e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6RWR80.0A0A2R6RWR8_ACTCH; Trihelix transcription factor
STRINGPGSC0003DMT4000771994e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-66sequence-specific DNA binding transcription factors