PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn032401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 56911.5 Da PI: 4.6426 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 138.5 | 6.7e-43 | 141 | 499 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL + ea++ + el + + r+ e +sp g++++Rl +++ ++ +++ + +et ++ aa+k+f++++P+ k++h+taN a Achn032401 141 HLLKAYGEAMEMAQRELEDVITRRIMEKVSPVGETLERLGFHLFHSMR--MTE------EEHLIQET----NKNFEAAFKAFYQIFPYGKLAHFTANLA 227 67777788899999999999999*******************999875..555......22333344....35667899******************** PP GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198 Ileav ++ e++Hi+Dfd+++G+QW++++++ as ++ lR+T ++s ++ l e ++L + A+++g++++ + + ++le+ e+++++ + Achn032401 228 ILEAVPENiETIHIVDFDAGEGVQWAPMIESVASLRK---ALRLTLIKS----GEDLLGEATRQLYDHARSCGLKLKVEEVGIEDLES-EIKKMKHRGg 318 *****9999************************9755...6********....99*************************85555554.4777766667 PP GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikvE 286 +E la n+++ l ++ +e ++s+ +e+L++ k+l ++ ++v+ + +a + + + f l++y al +s+e ++p e+ri +E Achn032401 319 rREWLAFNCMVGLPHMRKE--RSRSHVREFLRQAKELLANfennegIIVIGDGDAGErlrSCSGYSSFFEGYLSHYQALCESMEWNFPVSLaEARIAME 415 79**************844..4455579********976544444599999999764344556788888889***************98777******* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 ++++ +++ + ++ + ++++ ++ e G++ ++l++++ +ak ++r + y v ++++++vl W+++pLv vS Wr Achn032401 416 SLFVAPFVSSPIWLRKWK------KVREDSDLYAEIGLNGLRLTKENLVEAKEMVRDGE-SLYAVRiggQNNNEMVLEWRGNPLVRVSTWR 499 ***************998......3444479999***********************99.44888888999*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.113 | 113 | 477 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-40 | 141 | 499 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MMQPELLEQL SWPYHNIINS PLDQEFPFSF SNTKDSFSSG ISSDQFLFTD VVVEYPMTGD 60 EFQVTDGDCM EGLEPIWGGD QLGDVCRWLC KDESEESFPS TNQYTEPKDV WSLSQSTKSS 120 DLLLTLPGGN IDIDSQLSLG HLLKAYGEAM EMAQRELEDV ITRRIMEKVS PVGETLERLG 180 FHLFHSMRMT EEEHLIQETN KNFEAAFKAF YQIFPYGKLA HFTANLAILE AVPENIETIH 240 IVDFDAGEGV QWAPMIESVA SLRKALRLTL IKSGEDLLGE ATRQLYDHAR SCGLKLKVEE 300 VGIEDLESEI KKMKHRGGRR EWLAFNCMVG LPHMRKERSR SHVREFLRQA KELLANFENN 360 EGIIVIGDGD AGERLRSCSG YSSFFEGYLS HYQALCESME WNFPVSLAEA RIAMESLFVA 420 PFVSSPIWLR KWKKVREDSD LYAEIGLNGL RLTKENLVEA KEMVRDGESL YAVRIGGQNN 480 NEMVLEWRGN PLVRVSTWR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077641.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2R6R8G2 | 0.0 | A0A2R6R8G2_ACTCH; Nodulation-signaling pathway 2 protein | ||||
STRING | EOY07107 | 1e-157 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-23 | GRAS family protein |