PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn029521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 251aa MW: 28797.6 Da PI: 8.1279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn029521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.8	3.4e-30	28	150	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 p G+rF Pt e+l+++yLk+kv++++l++ +vi e+d ++++PwdLp ++++ +fF+kr k +g+r n + +sg Wka+gk+ +vl++ ++++ Achn029521 28 PIGYRFCPTSEQLLKYYLKPKVDSRPLHA-QVIVEFDAFQTNPWDLP---GDGKEKRFFFCKR--KLGNGRRWNGMSESGCWKAKGKEVRVLDNeSDQV 120 89************************9.99***********...34567889997..557899*******************9866778 PP NAM 100 vglkktLvfykgr.apkgektdWvmheyrl 128 +g+k++L+f +++ + + k +Wvm+eyrl Achn029521 121 IGVKRSLIFCEKKyHGDVLKHQWVMKEYRL 150 ******654144455*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-40	17	170	IPR003441	NAC domain
PROSITE profile	PS51005	39.726	27	170	IPR003441	NAC domain
Pfam	PF02365	4.5E-19	28	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDGFDKTKFG CELADRPMFV TIGGLKFPIG YRFCPTSEQL LKYYLKPKVD SRPLHAQVIV 60 EFDAFQTNPW DLPGDGKEKR FFFCKRKLGN GRRWNGMSES GCWKAKGKEV RVLDNESDQV 120 IGVKRSLIFC EKKYHGDVLK HQWVMKEYRL VDSQKGMQLE DWVVCKVYQK PHKTKYRRIR 180 IQASDSSEES SVVDPMEGDR HSRDESSHDV PQISSPSSSS SSSSSWISEI SSIESDQEET 240 SPTFFHFVLS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-23	25	170	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-23	25	170	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-23	25	170	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-23	25	170	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-23	25	170	18	168	NAC domain-containing protein 19
3swm_B	1e-23	25	170	18	168	NAC domain-containing protein 19
3swm_C	1e-23	25	170	18	168	NAC domain-containing protein 19
3swm_D	1e-23	25	170	18	168	NAC domain-containing protein 19
3swp_A	1e-23	25	170	18	168	NAC domain-containing protein 19
3swp_B	1e-23	25	170	18	168	NAC domain-containing protein 19
3swp_C	1e-23	25	170	18	168	NAC domain-containing protein 19
3swp_D	1e-23	25	170	18	168	NAC domain-containing protein 19
4dul_A	1e-23	25	170	15	165	NAC domain-containing protein 19
4dul_B	1e-23	25	170	15	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6P8W7	0.0	A0A2R6P8W7_ACTCH; NAC domain-containing protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	5e-35	NAC domain containing protein 83