PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn028591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 383aa MW: 42638.8 Da PI: 8.9036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn028591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	312	334	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+++F++ L H r+H Achn028591 312 HECPICHRVFKSGQALGGHNRSH 334 79**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.4E-8	63	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.993	63	90	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.99E-8	63	85	No hit	No description
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.99E-8	307	334	No hit	No description
Pfam	PF13912	2.0E-11	312	334	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	312	334	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.12	312	334	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	314	334	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MRTHGTSNSS ESDEKFEPNV IKISSLNDSR FELGGQSGHG LRENPKKTWR LMGSTKRSPK 60 QDHICKQCGK GFQSLKALCG HMACHSEKDR VLKDDRWISE NDSDTEAKAL RRSKRAASMR 120 YKRFVVKSSC FGSSVSEVDH EQEEVAMCLL MLSRDCGNWV GVNSVVVESS DNNSVVLETK 180 SSSIDMRNIG GLNCVYNGDE SVGIRKLGKR KLKPVEFENS DSGYFVNGAK KVDSDVSVDE 240 FLTNDSFKKQ KLEGGSRFKA SDTEFGTGFS KVKSRGADDL GKRSKYEFGG KKKKDLNCNG 300 ERRPKSKKGK GHECPICHRV FKSGQALGGH NRSHVLGVSD EKINQTQIRK QEFSETCDLI 360 DLNLSAPEEE EVANKHSEFM PW*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MRTHGTSNSS ESDEKFEPNV IKISSLNDSR FELGGQSGHG LRENPKKTWR LMGSTKRSPK  60
QDHICKQCGK GFQSLKALCG HMACHSEKDR VLKDDRWISE NDSDTEAKAL RRSKRAASMR  120
YKRFVVKSSC FGSSVSEVDH EQEEVAMCLL MLSRDCGNWV GVNSVVVESS DNNSVVLETK  180
SSSIDMRNIG GLNCVYNGDE SVGIRKLGKR KLKPVEFENS DSGYFVNGAK KVDSDVSVDE  240
FLTNDSFKKQ KLEGGSRFKA SDTEFGTGFS KVKSRGADDL GKRSKYEFGG KKKKDLNCNG  300
ERRPKSKKGK GHECPICHRV FKSGQALGGH NRSHVLGVSD EKINQTQIRK QEFSETCDLI  360
DLNLSAPEEE EVANKHSEFM PW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	211	RKLGKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122442.1	1e-144	zinc finger protein ZAT4-like
TrEMBL	A0A2R6RFP4	0.0	A0A2R6RFP4_ACTCH; Zinc finger protein
STRING	VIT_01s0011g00710.t01	2e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1343	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-48	C2H2-like zinc finger protein