PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn024831

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YC

Protein Properties

Length: 581aa MW: 65950.3 Da PI: 9.0708

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn024831	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.7	6.2e-19	220	300	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ade+v +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ ++fdfl div + Achn024831 220 DTRFPAARIKKIMQADEEVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSFHLKQCVQSFNVFDFLRDIVSK 300 678***************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.2E-26	217	286	IPR009072	Histone-fold
SuperFamily	SSF47113	2.73E-19	218	302	IPR009072	Histone-fold
Pfam	PF00808	1.5E-18	222	285	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MNSLEIYPKS LTSRYRIIGA NFQIRKKNIN PLQNINSAPN LHREQRTTHI KRLSGMSNQK 60 KTKNKRDKRD RIGKRERGRE IYLLRRREKA GRSIEIVIYS NGDWINFRER SRTEADTDTE 120 RKERERETDR YCEAKTESTE LGFYYKDRFG KRGFNLTGAL RLLMDNIIRR PKMYSAPFNP 180 VGDVAAKKKS IEEIGIPQKT RVPVTVGVLY SSNAMRKKLD TRFPAARIKK IMQADEEVGK 240 IAMAVPLLVS KALELFLQDL CDRTYEITLQ RGAKTVNSFH LKQCVQSFNV FDFLRDIVSK 300 VPDLGGSDAA GEDRSAAKRR KVADSEEHDS EDELKRGRMH EIGHTSSSGR GRGRGRGRGR 360 GRGSRTVDRE LIVHDVKLED DPDISQHDEK EKQNVGRLDN GAVPEGSKES IAISNNAEAT 420 ARNFDLNVDL NETVDSTTML PTTPAASSAK PVLETKHEEY PGWSLADMEK MAIDPVQLAN 480 LNRSIDEEEE DYDEEGLFFG CPVPASEWGG LFMETTDASS WLQLRSLYIE SNLKKYKNFE 540 MEEKIINFFG LGSKSGSDSD VLIRSVKYGS IEFGLHEFSD *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MNSLEIYPKS LTSRYRIIGA NFQIRKKNIN PLQNINSAPN LHREQRTTHI KRLSGMSNQK  60
KTKNKRDKRD RIGKRERGRE IYLLRRREKA GRSIEIVIYS NGDWINFRER SRTEADTDTE  120
RKERERETDR YCEAKTESTE LGFYYKDRFG KRGFNLTGAL RLLMDNIIRR PKMYSAPFNP  180
VGDVAAKKKS IEEIGIPQKT RVPVTVGVLY SSNAMRKKLD TRFPAARIKK IMQADEEVGK  240
IAMAVPLLVS KALELFLQDL CDRTYEITLQ RGAKTVNSFH LKQCVQSFNV FDFLRDIVSK  300
VPDLGGSDAA GEDRSAAKRR KVADSEEHDS EDELKRGRMH EIGHTSSSGR GRGRGRGRGR  360
GRGSRTVDRE LIVHDVKLED DPDISQHDEK EKQNVGRLDN GAVPEGSKES IAISNNAEAT  420
ARNFDLNVDL NETVDSTTML PTTPAASSAK PVLETKHEEY PGWSLADMEK MAIDPVQLAN  480
LNRSIDEEEE DYDEEGLFFG CPVPASEWGG LFMETTDASS WLQLRSLYIE SNLKKYKNFE  540
MEEKIINFFG LGSKSGSDSD VLIRSVKYGS IEFGLHEFSD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-20	216	286	5	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	74	QKKTKNKRDKRDRIGKR
2	351	361	RGRGRGRGRGR
3	353	362	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	5e-66	NF-YC family protein