PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 882aa    MW: 99050.5 Da    PI: 8.1732
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21134235199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   ++++++l
  Achn023421 134 FCKTLTASDTSTHGGFSVPRRAAEKNfppldftMQPPAQ--ELVARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFI--RDEKQQL 228
                 99*****************************96555444..8************************************************..5578888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++ +r+
  Achn023421 229 LLGTRRA 235
                 9999886 PP
2Auxin_resp1187.9e-39260343183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekveka.lkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++++s+GmRf+m+fete+s +rr++Gt++g+ dldpvrW+nS+Wr+L+
  Achn023421 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAaCSNQISLGMRFRMMFETEESGTRRYMGTITGIGDLDPVRWKNSQWRNLQ 343
                 79***************************98776167*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-40127249IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-19133225No hitNo description
SMARTSM010191.6E-21134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42134236IPR003340B3 DNA binding domain
PfamPF023621.5E-19134235IPR003340B3 DNA binding domain
PfamPF065071.3E-34260343IPR010525Auxin response factor
PROSITE profilePS5174526.693769853IPR000270PB1 domain
SuperFamilySSF542773.24E-7780847No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MQFFFFLSLL TIRKKKFNGG GGEKKNINAE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKVVDG QIPNYQNLPS KLICLLHNIT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKVNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKNF PPLDFTMQPP AQELVARDLH  180
DNIWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDAVLF IRDEKQQLLL GTRRANRQPT  240
NLSSSVLSSD SMHFGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAACSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGIGDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPSFFR SKRPRQPGMP DDEFSDLDNL FKRTMPWLGD DMYMKDPQSL  420
PGLSLAQWMN MQQNSSLGNS LQPNYLHSLS GSILQNLAGS LPATQIPQQN NIQFNTQKPI  480
QQAQLDQLQQ LPAATLNPLG SIVQQQPQST DSTQQPKQNL INQTLPNTQV QAQLLQSQAF  540
TQTQNIYQQQ PSVQNHQLHR NHSQNQQILG QSQQHNLVQS QLPDQVNQQL RMPENQIQLQ  600
LLQKLQQQKQ VLLAQQSTLQ QPSQLPQVQD QQRQLLDSSQ SFSRSGNPSQ MEEMPQAAAT  660
SLPQSHLHPQ HLSKSNSQQN LQFSHPPQQL KLLQQQLLSG SGKDFSNNLP SGGYENPKDA  720
QPELSSSMVS QSFGVPDMTF NSLDSAINDS SFLNRGTWAS PAPQFQRLRT YTKVYKRGAV  780
GRSIDITCYS GYEELKQDLA RRFGIEGQLE DRHRIGWKLV YVDHENDVLL VGDDPWEEFV  840
NCVRCIKILS PQEVQAMSLD GDFGKSALPN QACSSSDGGN V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682136445388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2R6S2620.0A0A2R6S262_ACTCH; Auxin response factor
STRINGEOY321500.0(Theobroma cacao)
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
STRINGXP_010106948.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19