PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn018011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 720aa    MW: 78835.8 Da    PI: 6.0154
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn018011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08301321526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G+C++Gd C +aHg
  Achn018011 301 PCPDFRK-GQCRRGDLCEYAHG 321
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-1539158IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-1040143IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.34379186IPR020683Ankyrin repeat-containing domain
SMARTSM002486.7E-479109IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-1679159IPR020683Ankyrin repeat-containing domain
CDDcd002042.31E-1479160No hitNo description
SMARTSM002480.01114146IPR002110Ankyrin repeat
PROSITE profilePS5008811.461114149IPR002110Ankyrin repeat
SMARTSM003569.0E-6296322IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507301323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4329359IPR000571Zinc finger, CCCH-type
SMARTSM0035625331354IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052331355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MCSGPEQLNS ETPIPSSASV KLTIDMNNLA EISFSSLLEL AADNNVEGFK QLIFCIASAI  60
NDMGLWYGRQ RASNQMVLEH RTPLMVAAMY GSVDVVKLIL SLSEVDVNLS CGPDKSTALH  120
CAASSGSVNA VDVVKLLLIA GADRSSMDAN GRRPIDVVVA PPKFPDLKDA LEVFLRDDDS  180
IHLEDLKISC GGEKSVSPPL SSSPKNGLLF SSVESSASLN HFRFGDIPAS CAPEKKEYLV  240
DPSFPDIKNS VYSTDEFRMF SFKIRPCSRA YSHDWTECPF VHPGENARRR DLRKFHYSCV  300
PCPDFRKGQC RRGDLCEYAH GVFECWLHPA QYRTRLCKDG TSCSRRVCFF AHTPEELRPL  360
YMSTGSAVPS PRSSTSAASV MDMAVALSLL PGSPSAVGGM SPSPFTPPMS PSGNAIMHPS  420
VAWPQQNIPA LHLPGSNLQT SRLRSSFNAR DIPTEELNML LDFEVQQQQF LNDISCFSQT  480
HPNTSSTNLP VRSKTLTPSN LDNIFSTEVS SPRFTDQNVA SPMFSPSHKP VVLNQFQQPQ  540
NILSPINTNL YSPNNVDHPF MQAPYHVPSP GRISPRGIEL QSPFSPRLSS LAHCENQQTQ  600
LRSLSSRDLG TNLPRNLGSN GAGIVGSPVN SLAKWEYPNG AVDWSVNEDE LARVRKSFTS  660
GHNGEEPDLS WVQSLVKESP PEIKESPPNE DSDSNSTEKL DHAVLGAWLE QMQLDKVVA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068109.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028068110.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2R6QTU70.0A0A2R6QTU7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]