PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn014771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 325aa    MW: 36255.8 Da    PI: 7.9882
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn014771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.9e-183771797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 +p kfa++  +k++ +  +t++ +sg +W+v l    +++ +++++GWk Fv+++ L+e D+++Fk++g+s+f   v +f
  Achn014771  3 AIPPKFANN--LKEKLPENVTIKGPSGAKWNVGL--VTSGDNVLFKRGWKVFVEDHSLEEDDVLIFKYNGDSRF--DVLIF 77
                59****944..45668889***************..999999****************************9999..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086316.088180IPR003340B3 DNA binding domain
SMARTSM010194.2E-8180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-20378IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-15377IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-19378IPR015300DNA-binding pseudobarrel domain
CDDcd100179.90E-19478No hitNo description
CDDcd100171.39E-9220301No hitNo description
SMARTSM010190.026221303IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-10227301IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-12237301IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.516240303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQAIPPKFAN NLKEKLPENV TIKGPSGAKW NVGLVTSGDN VLFKRGWKVF VEDHSLEEDD  60
VLIFKYNGDS RFDVLIFNGR NLCEREASYF VRKCGHTELD GGSQTKRNIV ESSVEVSHTE  120
DYALSKRPKK DDNVTPVKKG SHSRANGRIR KGARSHLLVE LETANAEIST YGGPEKVNSN  180
AKKGSVTAYP VQHVSNRRPV TEGEKEKALQ MAHAASTKDS IIVVMRLSHV YRGFYMNQQV  240
ILRMKEKTWR ANFNYKDYGG GLTGGWRNFA FENNLEEFDV CLFELAGGAT DAIIMDVSIF  300
RVIDESKSDD YDLSKGTLSC ETGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061149.11e-137B3 domain-containing protein REM16
TrEMBLA0A2R6PZZ40.0A0A2R6PZZ4_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-49B3 family protein