PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn014051

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CPP

Protein Properties

Length: 773aa MW: 84146.8 Da PI: 5.7518

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn014051	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.8	6.7e-16	509	547	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk Achn014051 509 CKRCNCKKSKCLKLYCECFAAGVYCVEPCTCQECFNKPA 547 89**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.9E-16	507	548	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.791	508	601	IPR005172	CRC domain
Pfam	PF03638	1.2E-11	510	545	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MGEERERESE SESEACGRGG PVMDTPVRNQ IAAPGSQFEE SPVFNYINSL SPINTVKSMR 60 ISQTFNSYSF ASLPSIFTSP HVSSLKESGC LRSESLYEWL RFHFRHHLLD PSRPEFSSDN 120 GNKVGVTGVV ADVLHNSDEQ TENFDPGSCI GESSVEPTYE CPELAIEVSR TLSYDCGSPE 180 CSATPCHRIE TKFVSELEVP EAMFLGIGVH LEGISNTEQN KEGEGRDWES LISDAAGLLS 240 FDSPNDTEAS KGRFQESLDP GTRLCVSLIS GFTHDEINPL QITQAVGPVG LEQNVSENPP 300 SQVGKEGHLK DLEATRDILA STSINTCVAA SSQQQDNEHV SNLHRGIRRR CLVFEMAGAY 360 RKHLDDGSSS GSSILSQSDV NNESRDKQMV TIRTSNGSSR CVLPGIGLHL NALTTTSKNC 420 TISNNLASGR QLIIESISAA PLHSLTTGQE SLNKSLTVTS AERHVGPAEN GVQNIEDASL 480 ASGYIEEFSQ SSPKKKRRRL ENAGESEGCK RCNCKKSKCL KLYCECFAAG VYCVEPCTCQ 540 ECFNKPAHED FVLATRKQIE SRYPLAFAPK VIRSSDSVPE IGGGVGCSIN CRCEGCKNAF 600 GRKDGSTFIV AETELEEEET ETSEKSVLNK SLRKNVIQNS IEQNLDSALP ATPLRSVRAL 660 VHLPFSSKSK PPRSSLLSIG SSSGFYGIQK FGKQNFLQPQ PKFEKRIQDV QEDEMPDILQ 720 GDSSPISGVK SSPNSKRVSP PHTDFGSSPG RRSSRKLILQ SIPSFPSLTP KH*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MGEERERESE SESEACGRGG PVMDTPVRNQ IAAPGSQFEE SPVFNYINSL SPINTVKSMR  60
ISQTFNSYSF ASLPSIFTSP HVSSLKESGC LRSESLYEWL RFHFRHHLLD PSRPEFSSDN  120
GNKVGVTGVV ADVLHNSDEQ TENFDPGSCI GESSVEPTYE CPELAIEVSR TLSYDCGSPE  180
CSATPCHRIE TKFVSELEVP EAMFLGIGVH LEGISNTEQN KEGEGRDWES LISDAAGLLS  240
FDSPNDTEAS KGRFQESLDP GTRLCVSLIS GFTHDEINPL QITQAVGPVG LEQNVSENPP  300
SQVGKEGHLK DLEATRDILA STSINTCVAA SSQQQDNEHV SNLHRGIRRR CLVFEMAGAY  360
RKHLDDGSSS GSSILSQSDV NNESRDKQMV TIRTSNGSSR CVLPGIGLHL NALTTTSKNC  420
TISNNLASGR QLIIESISAA PLHSLTTGQE SLNKSLTVTS AERHVGPAEN GVQNIEDASL  480
ASGYIEEFSQ SSPKKKRRRL ENAGESEGCK RCNCKKSKCL KLYCECFAAG VYCVEPCTCQ  540
ECFNKPAHED FVLATRKQIE SRYPLAFAPK VIRSSDSVPE IGGGVGCSIN CRCEGCKNAF  600
GRKDGSTFIV AETELEEEET ETSEKSVLNK SLRKNVIQNS IEQNLDSALP ATPLRSVRAL  660
VHLPFSSKSK PPRSSLLSIG SSSGFYGIQK FGKQNFLQPQ PKFEKRIQDV QEDEMPDILQ  720
GDSSPISGVK SSPNSKRVSP PHTDFGSSPG RRSSRKLILQ SIPSFPSLTP KH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	499	PKKKRRRL
2	493	498	KKKRRR
3	495	499	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108166.1	0.0	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A2R6Q3I9	0.0	A0A2R6Q3I9_ACTCH; CRC domain-containing protein
STRING	VIT_05s0020g03880.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2467	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-112	Tesmin/TSO1-like CXC domain-containing protein