PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn011281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 364aa    MW: 39907.4 Da    PI: 6.4377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn011281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY491.2e-15981421859
                 -SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  18 sefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 + + r+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Achn011281  98 ASTKRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGRHTCT 142
                 5578********98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031063.3E-1497141IPR003657WRKY domain
SMARTSM007742.1E-1497143IPR003657WRKY domain
SuperFamilySSF1182902.35E-1397142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-1597142IPR003657WRKY domain
PROSITE profilePS5081113102139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDNFSANWEQ KSLINELAQG LELAKQLQIH LNVSSSSQET RELLVHKILN SYDKALSILK  60
FKVSAAEPQP ELSLRSLAGS PNSEDSDFDF KDHEHVNAST KRGYYRCTHR NVQGCLATKQ  120
VQRSDEDPTI FEITYRGRHT CTDSSLSIPS KPNAALGNQP QQINHHPPQS HQNPLLSFQT  180
GLKVLTEDLN TENQSISSFY FPSTSQFKAE NSVPSHTMTG NNLMTTTNFS PSFMSPGTSG  240
SNYFTVSPTN MISFDRNQAL PAPESELGGI VLASTASTTN SPTLGFDFPF GGLDDHFEPT  300
FSFDNSRFGS LEQIVGSVRG VKMVRSPKRP ELSPSPSPAK VFELGLGIEF GARSLAQTMR  360
PTP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318373.19e-86probable WRKY transcription factor 30
TrEMBLA0A2R6Q9500.0A0A2R6Q950_ACTCH; WRKY transcription factor 41
STRINGPOPTR_0012s01380.14e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-27WRKY family protein