PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn007081

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 247aa MW: 26285.2 Da PI: 4.5132

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn007081	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.5e-17	59	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a ++++g Achn007081 59 VLRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAELSIKG 108 569*998.******854...6*******************999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.7E-11	58	108	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.234	59	116	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-20	59	116	IPR016177	DNA-binding domain
PRINTS	PR00367	4.1E-9	60	71	IPR001471	AP2/ERF domain
CDD	cd00018	4.31E-29	61	116	No hit	No description
SMART	SM00380	1.3E-31	61	122	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-29	61	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-9	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSTENQNSEP ESSSNSLSST PSSPSSPGST QSALIRPGSA QDPEPRKPKR VRENSKHPVL 60 RGVRMRNWGK WVSEIREPKK KSRIWLGTFP TPEMAARAHD VAELSIKGSA AVLNFPSLAA 120 SLPRPASLSP RDVQAAAAKA AALPDFESAA VDELDSVAEP GSSSSSSSLV LAMELASSAE 180 ELGEIVELPS LGASYDSAEL GSEFVYGDSV DGWLYPPPWF HCGDEQVWGT SDCVIAGCFD 240 SFLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	55	116	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058091.1	3e-79	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	2e-70	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A2R6PHB4	1e-175	A0A2R6PHB4_ACTCH; Dehydration-responsive element-binding protein
STRING	Gorai.009G050200.1	3e-76	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-62	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]