PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn006251

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Protein Properties

Length: 376aa MW: 42496.5 Da PI: 4.6476

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn006251	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.4	6.2e-19	18	108	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k +++s+v++ +l++pk+f++ h ++k+ + t++l des ++++vk+ ++k++ l++GW++F+ a++L e+D++vF+l+++ +f +v ++r+ Achn006251 18 FVKLMLQSHVTRGFWLSFPKQFCDLH-LPKH-DDTVILVDESDEQYKVKYLVEKNG----LSGGWRGFAIAHKLLERDVLVFQLVQHCKF--KVYIVRA 108 89*******************888.4443.459***********777777....***********************99999..8888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-21	12	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.22E-24	14	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.42E-26	16	107	No hit	No description
Pfam	PF02362	4.4E-17	18	108	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-24	18	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.407	18	109	IPR003340	B3 DNA binding domain
Pfam	PF05266	5.0E-9	253	364	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKRSQEVQAN LAAEFPSFVK LMLQSHVTRG FWLSFPKQFC DLHLPKHDDT VILVDESDEQ 60 YKVKYLVEKN GLSGGWRGFA IAHKLLERDV LVFQLVQHCK FKVYIVRANG LTEIDGAIAL 120 LTLDACVKPM DVDQTEKDMT IYGEGEKCSE SLSVDFHQCN VEENGMFTLS TVAEQPGNDS 180 DEFGSEVLEG IRFSESSVDF KDINSIENFT ILVDGLVIDS EIPPHLQSKY YELCCSQNAF 240 LHDHLLDGLN CKLAAGIICE TVNIADAIRA SKLTTSRDNF TTWDNTLKAF EKLGMNVKFL 300 CARLDRLVSF AFDSERVLES KRVERVQAEE EIRTLEAKLL QVKELMKNLD EEIDGLKGKN 360 KMLEVKFCEE ANAPW*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKRSQEVQAN LAAEFPSFVK LMLQSHVTRG FWLSFPKQFC DLHLPKHDDT VILVDESDEQ  60
YKVKYLVEKN GLSGGWRGFA IAHKLLERDV LVFQLVQHCK FKVYIVRANG LTEIDGAIAL  120
LTLDACVKPM DVDQTEKDMT IYGEGEKCSE SLSVDFHQCN VEENGMFTLS TVAEQPGNDS  180
DEFGSEVLEG IRFSESSVDF KDINSIENFT ILVDGLVIDS EIPPHLQSKY YELCCSQNAF  240
LHDHLLDGLN CKLAAGIICE TVNIADAIRA SKLTTSRDNF TTWDNTLKAF EKLGMNVKFL  300
CARLDRLVSF AFDSERVLES KRVERVQAEE EIRTLEAKLL QVKELMKNLD EEIDGLKGKN  360
KMLEVKFCEE ANAPW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083677.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A2R6RC02	0.0	A0A2R6RC02_ACTCH; B3 domain-containing protein
STRING	XP_009778966.1	1e-157	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-39	B3 family protein