PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn003771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 399aa    MW: 44772.1 Da    PI: 5.3717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn003771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52181451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv++yLk+k+ gk++++ e+++e+d+yk+ePw+L   +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + k+
  Achn003771  18 LAPGFRFHPTDEELVQYYLKRKACGKPFRF-EAVSEIDVYKSEPWELSghSRLKSRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRQVRH-KS 114
                 579*************************99.89**************85348888888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g+kktLvf++grap+g++t+Wvmheyrl
  Achn003771 115 QTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 145
                 9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-6113162IPR003441NAC domain
PROSITE profilePS5100557.92818162IPR003441NAC domain
PfamPF023651.4E-2820145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAHNLGEITP PPASGTSLAP GFRFHPTDEE LVQYYLKRKA CGKPFRFEAV SEIDVYKSEP  60
WELSGHSRLK SRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRQV RHKSQTIGMK  120
KTLVFHSGRA PDGKRTNWVM HEYRLVDGAA QDAFVLCRIF QKSGLGPPNG DRYAPFIDEE  180
WDNDASLVVP GEEAGDEMVN GDDAQVEGNE LEQDIHSTNK SPLRLAELPN LSQTVPFVCK  240
RERSEDCPLP GIANPEPLSL VPNKRTKNDD PNSSNANGSE DSNTTPPDLC ISTTTTTTRA  300
TNFSSAMLEF TLLESVEPKE NLPNNLHAFD ASNLEKSVPP GYLKFISNLE NEILNVSMER  360
ETLKIEVMRA QAMINILQSR IDLLNRDNEE LRRVFRDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-521216214168NAC domain-containing protein 19
3swm_B9e-521216214168NAC domain-containing protein 19
3swm_C9e-521216214168NAC domain-containing protein 19
3swm_D9e-521216214168NAC domain-containing protein 19
3swp_A9e-521216214168NAC domain-containing protein 19
3swp_B9e-521216214168NAC domain-containing protein 19
3swp_C9e-521216214168NAC domain-containing protein 19
3swp_D9e-521216214168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125951.10.0NAC domain containing protein 50-like isoform X1
RefseqXP_028125952.10.0NAC domain containing protein 50-like isoform X2
TrEMBLA0A2R6QAX90.0A0A2R6QAX9_ACTCH; NAC domain-containing protein
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-113NAC domain containing protein 50