PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn002531

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 1134aa MW: 129072 Da PI: 9.1907

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn002531	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	34	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YAk GF ++++skk+ ++g t+ C ++gk+++++ + +++++t+++Cka+++++++ dgkw+++++el+HnHel Achn002531 34 EYYSTYAKAKGFGSVVKASKKR-DDGVNAYITYACHRSGKPRTTTLN---PVKSHPTTKVDCKAHMNISLQVDGKWMLNSIELNHNHELD 119 69********9999988876.8999999********99888...9999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-17	34	120	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-6	240	275	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	422	460	IPR007527	Zinc finger, SWIM-type
SMART	SM00663	7.5E-6	611	885	IPR006592	RNA polymerase, N-terminal
SuperFamily	SSF64484	2.24E-29	700	844	No hit	No description
Pfam	PF00623	5.7E-19	729	849	IPR000722	RNA polymerase, alpha subunit
Gene3D	G3DSA:2.40.40.20	1.6E-9	737	761	No hit	No description
Gene3D	G3DSA:2.40.40.20	1.6E-9	818	847	No hit	No description
Gene3D	G3DSA:3.10.450.40	4.1E-24	1023	1096	No hit	No description
Pfam	PF11523	1.1E-22	1024	1091	IPR021602	Protein of unknown function DUF3223

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence Send to blast
MEIEDMDLEK NMNVEAVLEP KVGNIFNSED EAKEYYSTYA KAKGFGSVVK ASKKRDDGVN 60 AYITYACHRS GKPRTTTLNP VKSHPTTKVD CKAHMNISLQ VDGKWMLNSI ELNHNHELDP 120 EKAKYLKCYR TLPPHSQRAL ELSMDVGIKL TPFIRACVIG EGGPDNVTWT EKDARNHKDK 180 VRRSEFKERD AEAMHKYFVR MQEDNGNFFY AIDVDKDHRL INAFWADARS IELYQEFGDV 240 VTFDTTYLVN MFDMPFAPFV GIDQHGLSIL FGCGLNNGWL AGLYEERHRW VPAFVKDTFW 300 VGMSTTQRSE SMNAFFDGYV HSNTSLKEFV EQYDNALRKK VQQEEEADAR SLKVQIKNVS 360 PYEYENQFQQ AYTVKKCKQF REQVAATIGC SLTIGPVVNG ISQFHIEQDI LVGKKHNFFK 420 TFTFLVHFNE ESTETNCNCR LFESKGMVCA HMIKVWSKKK LQVVLDKYIL RRWRKNLVRS 480 CTKIKVSYVK WERKPEFVRY DSLAKLFNEG ADKVIYSTAK TNRMAARLRE IIVENELDVE 540 NYPSNMPTVG DAQFDLESLL DNSNNVGDPS KGPRRGRPVA GSKRQPRNCR YCDGGFRDYY 600 PQMNFKVSSN DVFGKTAIIV EVKERFSKKS QSRSSGEDLA SDYWDIIPKD VQQEESSMKP 660 NRRILSHAQD GRTRAFKKLV CFRGTANELS LRVLDSLRTS KIHSEKPSAT DIAPNSTSGL 720 KHIKELLLGK RSDHVFRMVI VGDPNVKLSE IGIPCHIAER LQVSKHLKSW NSEKLNTCCN 780 LWILEKGESF VRRKDNLLRI TSMDKLQIGD TVYRPLNDGD IVLINRPPSI HQHSFIALSV 840 KEMTKRRRLN VRSIVDALYM QWNSTGTRSK TNIPKLQITS EVCSVADNKK ENNATICITV 900 TLVEGARNSG IQLDNLRDIV IPYLLGTVVK GFPEFKKNPA DCLIKAAKKG VLDNLQGSID 960 ALSWGKMPSI GTGGRFDIIY SGKGHELAKP EDVNKLLGSH VSSHEQNVKV KVPGELNGMS 1020 DKCYPINHRL SEVDKSIAMM ALYFHPRRNE KIGSGAQEIK VGYHSEHDNS RCFFMVRIDG 1080 TVEDFSYHKC IHRALEIIAP QRAKTYSLNK FKVLNDTCGL RVIPDIPVVY SAA*

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence Send to blast

MEIEDMDLEK NMNVEAVLEP KVGNIFNSED EAKEYYSTYA KAKGFGSVVK ASKKRDDGVN  60
AYITYACHRS GKPRTTTLNP VKSHPTTKVD CKAHMNISLQ VDGKWMLNSI ELNHNHELDP  120
EKAKYLKCYR TLPPHSQRAL ELSMDVGIKL TPFIRACVIG EGGPDNVTWT EKDARNHKDK  180
VRRSEFKERD AEAMHKYFVR MQEDNGNFFY AIDVDKDHRL INAFWADARS IELYQEFGDV  240
VTFDTTYLVN MFDMPFAPFV GIDQHGLSIL FGCGLNNGWL AGLYEERHRW VPAFVKDTFW  300
VGMSTTQRSE SMNAFFDGYV HSNTSLKEFV EQYDNALRKK VQQEEEADAR SLKVQIKNVS  360
PYEYENQFQQ AYTVKKCKQF REQVAATIGC SLTIGPVVNG ISQFHIEQDI LVGKKHNFFK  420
TFTFLVHFNE ESTETNCNCR LFESKGMVCA HMIKVWSKKK LQVVLDKYIL RRWRKNLVRS  480
CTKIKVSYVK WERKPEFVRY DSLAKLFNEG ADKVIYSTAK TNRMAARLRE IIVENELDVE  540
NYPSNMPTVG DAQFDLESLL DNSNNVGDPS KGPRRGRPVA GSKRQPRNCR YCDGGFRDYY  600
PQMNFKVSSN DVFGKTAIIV EVKERFSKKS QSRSSGEDLA SDYWDIIPKD VQQEESSMKP  660
NRRILSHAQD GRTRAFKKLV CFRGTANELS LRVLDSLRTS KIHSEKPSAT DIAPNSTSGL  720
KHIKELLLGK RSDHVFRMVI VGDPNVKLSE IGIPCHIAER LQVSKHLKSW NSEKLNTCCN  780
LWILEKGESF VRRKDNLLRI TSMDKLQIGD TVYRPLNDGD IVLINRPPSI HQHSFIALSV  840
KEMTKRRRLN VRSIVDALYM QWNSTGTRSK TNIPKLQITS EVCSVADNKK ENNATICITV  900
TLVEGARNSG IQLDNLRDIV IPYLLGTVVK GFPEFKKNPA DCLIKAAKKG VLDNLQGSID  960
ALSWGKMPSI GTGGRFDIIY SGKGHELAKP EDVNKLLGSH VSSHEQNVKV KVPGELNGMS  1020
DKCYPINHRL SEVDKSIAMM ALYFHPRRNE KIGSGAQEIK VGYHSEHDNS RCFFMVRIDG  1080
TVEDFSYHKC IHRALEIIAP QRAKTYSLNK FKVLNDTCGL RVIPDIPVVY SAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	844	848	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	3e-44	FAR1-related sequence 1