PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn001091

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 1485aa MW: 165305 Da PI: 6.2733

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn001091	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.4	1e-56	467	583	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 ++ ++rwl++ ei++iL nf+k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw Achn001091 467 VEAQHRWLRPAEICEILRNFKKFRIAPEPAHKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYW 565 6779********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lLeee+++ivlvhy+evk Achn001091 566 LLEEEHSHIVLVHYREVK 583 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02458	5.5E-86	1	412	IPR003480	Transferase
Gene3D	G3DSA:3.30.559.10	2.2E-48	1	174	IPR023213	Chloramphenicol acetyltransferase-like domain
Gene3D	G3DSA:3.30.559.10	1.4E-53	203	419	IPR023213	Chloramphenicol acetyltransferase-like domain
PROSITE profile	PS51437	80.977	462	588	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.5E-77	465	583	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.5E-49	468	581	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.0E-5	970	1057	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.7E-6	971	1056	IPR002909	IPT domain
SuperFamily	SSF81296	5.77E-18	971	1057	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	3.5E-18	1075	1196	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.78E-12	1080	1192	No hit	No description
PROSITE profile	PS50297	18.033	1083	1204	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-17	1085	1194	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.1E-8	1105	1195	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.018	1133	1162	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.603	1133	1165	IPR002110	Ankyrin repeat
SMART	SM00248	100	1172	1201	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.98E-7	1306	1360	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	1309	1331	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.693	1311	1339	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.052	1312	1330	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.01	1332	1354	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.615	1333	1357	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.0E-4	1337	1354	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups

Sequence ? help Back to Top
Protein Sequence Length: 1485 aa Download sequence Send to blast
MEVEIVSTET IKPSSPTPIH LKTFSLSLLD QLNAPVFSKL VYFYPHAPSI SPRLKKSLSQ 60 ILPLFYPFAG RIRGNLYVDC TDDGPVFVEA RVNRSLEDVL KDPSDEVVRR FLSLDPRFCN 120 TDAGRPLLVV QTSFFECGGL AIGLLFFHKI ADAATMATFV TAWTAAACGS GDAVRSPELL 180 TAGSLFPPKD FLSNLQVPSG SEEKISTKRF VFDSSNVAAL KAESAGIIGP TRVELVSALI 240 WKCAAKAARS NASKRNPSVL FQSVNLRRRF NPPLPENSTG NIVGYFLVES TEEEGGEIDL 300 RGSVEGLKRG LIEFCEGYVK KLQEGENGCS AILERMNLFD RGDADTYTVT SWCRFPMQEA 360 DFGWGKPVWA ATACLPFKNI VVLMDSVGGG GVEAWVSLKD EDMVAFEGDP ELLAHASPNP 420 PISPRPALNL CSGDDSVRIW RSERVEKITR EREGSWRSLG DIEQILVEAQ HRWLRPAEIC 480 EILRNFKKFR IAPEPAHKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT VKEAHERLKA 540 GSIDVLHCYY AHGEENENFQ RRSYWLLEEE HSHIVLVHYR EVKGHRANFN RIKEAEEAIP 600 NSQESEEIVS NSEVYSSVSS KFKSYNYQVT SQTTDTSLNS TQASEYEDAE SAYNHQESSG 660 FHSFLELQPR AMEKMEDGVS VPYYPVPFSN DYLGKLPGVS GMDFGSLTEA EKGKNSVNAA 720 LTYPPEKHLD FPSWEDVLEN SGTGIQSVPF QPSLSANRPD TMSFNSGRGN EPRGQFFTEG 780 FSTKQEVGSY PHHQDKWQTS EDDSSHISKW SLDPKLHKDS SSHLIPGLRG EGHNVDLLNS 840 AGPRHEHPSD QNKHYTQTDF QMHLTYGEGG AMKSELESNL TVEGKAEPSP LKQPLLDGLL 900 KEGLKKLDSF DRWMSKELGD VNESHVQSSS GTYWETVEAE DGVDDSSIAS QAHLGAYMLG 960 PSLSQDQLFS IIDFSPNWAY AGSEIKVLIT GKFLKSQQDL EKCKWSCMFG EVEVPAEIIA 1020 DGVLRCHTPL HNAGRVPFYV TCSNRLACSE VREFEYRVND FSPDKIKEQL LQKLLKEKLH 1080 VWLLQKVAEG GKGPSVLDED GQGVLHFAAA LGYDWAIPPT LAAGVSINFR DVNGWTALHW 1140 AASCGRERTV GFLISLDAAP GALSDPTPIH PSGQTPADVA ASNGHKGIAG YLAESSLSSH 1200 LSSLQLKDNK EGGSGETSGV KVVQAVSERT ATPIMDGDLA HGLSLKDSLA AVCNATQAAA 1260 RIHQVFRVQS FQRKQIKEYG DDKFGMSEER ALSLVAVKSK SRLGHHDEPV QAAAIRIQNK 1320 FRSWKGRKEF LTIRQQIVKI QAHVRGHQVR KNYRKITWSV GIVEKIILRW RRKGSGLRGF 1380 KQEALPQASS KDMSSKEDDY DFLKEGRKQT EERLQKALAR VKSMVQYPEA RDQYRRLLNV 1440 VTEMQETKAV YDKVLNSTEE VADFDDLIDL EALLDDDTFM PTLS*

Sequence ? help Back to Top

Protein Sequence Length: 1485 aa Download sequence Send to blast

MEVEIVSTET IKPSSPTPIH LKTFSLSLLD QLNAPVFSKL VYFYPHAPSI SPRLKKSLSQ  60
ILPLFYPFAG RIRGNLYVDC TDDGPVFVEA RVNRSLEDVL KDPSDEVVRR FLSLDPRFCN  120
TDAGRPLLVV QTSFFECGGL AIGLLFFHKI ADAATMATFV TAWTAAACGS GDAVRSPELL  180
TAGSLFPPKD FLSNLQVPSG SEEKISTKRF VFDSSNVAAL KAESAGIIGP TRVELVSALI  240
WKCAAKAARS NASKRNPSVL FQSVNLRRRF NPPLPENSTG NIVGYFLVES TEEEGGEIDL  300
RGSVEGLKRG LIEFCEGYVK KLQEGENGCS AILERMNLFD RGDADTYTVT SWCRFPMQEA  360
DFGWGKPVWA ATACLPFKNI VVLMDSVGGG GVEAWVSLKD EDMVAFEGDP ELLAHASPNP  420
PISPRPALNL CSGDDSVRIW RSERVEKITR EREGSWRSLG DIEQILVEAQ HRWLRPAEIC  480
EILRNFKKFR IAPEPAHKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT VKEAHERLKA  540
GSIDVLHCYY AHGEENENFQ RRSYWLLEEE HSHIVLVHYR EVKGHRANFN RIKEAEEAIP  600
NSQESEEIVS NSEVYSSVSS KFKSYNYQVT SQTTDTSLNS TQASEYEDAE SAYNHQESSG  660
FHSFLELQPR AMEKMEDGVS VPYYPVPFSN DYLGKLPGVS GMDFGSLTEA EKGKNSVNAA  720
LTYPPEKHLD FPSWEDVLEN SGTGIQSVPF QPSLSANRPD TMSFNSGRGN EPRGQFFTEG  780
FSTKQEVGSY PHHQDKWQTS EDDSSHISKW SLDPKLHKDS SSHLIPGLRG EGHNVDLLNS  840
AGPRHEHPSD QNKHYTQTDF QMHLTYGEGG AMKSELESNL TVEGKAEPSP LKQPLLDGLL  900
KEGLKKLDSF DRWMSKELGD VNESHVQSSS GTYWETVEAE DGVDDSSIAS QAHLGAYMLG  960
PSLSQDQLFS IIDFSPNWAY AGSEIKVLIT GKFLKSQQDL EKCKWSCMFG EVEVPAEIIA  1020
DGVLRCHTPL HNAGRVPFYV TCSNRLACSE VREFEYRVND FSPDKIKEQL LQKLLKEKLH  1080
VWLLQKVAEG GKGPSVLDED GQGVLHFAAA LGYDWAIPPT LAAGVSINFR DVNGWTALHW  1140
AASCGRERTV GFLISLDAAP GALSDPTPIH PSGQTPADVA ASNGHKGIAG YLAESSLSSH  1200
LSSLQLKDNK EGGSGETSGV KVVQAVSERT ATPIMDGDLA HGLSLKDSLA AVCNATQAAA  1260
RIHQVFRVQS FQRKQIKEYG DDKFGMSEER ALSLVAVKSK SRLGHHDEPV QAAAIRIQNK  1320
FRSWKGRKEF LTIRQQIVKI QAHVRGHQVR KNYRKITWSV GIVEKIILRW RRKGSGLRGF  1380
KQEALPQASS KDMSSKEDDY DFLKEGRKQT EERLQKALAR VKSMVQYPEA RDQYRRLLNV  1440
VTEMQETKAV YDKVLNSTEE VADFDDLIDL EALLDDDTFM PTLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2bgh_A	3e-66	2	403	4	404	VINORINE SYNTHASE
2bgh_B	3e-66	2	403	4	404	VINORINE SYNTHASE
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434540	9e-50	AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019073077.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2R6RDE6	0.0	A0A2R6RDE6_ACTCH; Calmodulin-binding transcription activator 3 like
STRING	EOX92102	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	1e-151	ethylene induced calmodulin binding protein

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]