PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn001011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 293aa    MW: 33195.6 Da    PI: 9.2552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn001011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17219817100
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                  +p  f++ ++g++++s  + l+ +sg++W+v l   k++++ ++++GW  Fvk++  + gDf+vFk  ++s+f+++v++f+ks
  Achn001011  21 HIPLGFVKYMKGNTTGS--VFLTGPSGNTWQVDL--IKTGDGLFFRGGWDTFVKDHLAEFGDFFVFK--NTSDFHFKVTIFDKS 98 
                 48999996668887775..***************..9******************************..559*********985 PP
2B361.11.8e-19187280199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k +t+ +v++   l++p +f++++ ++  +s+ ++l+ ++g++W vkl +r+++++  l++GW++Fv++n+++egD+++F+l+g  efe++v++ rk
  Achn001011 187 FVKRMTRYNVHQVFVLRVPAPFMKDNFLDC-QSRNIVLRIPEGNEWIVKL-VRQGGCG-CLSGGWNNFVRDNHIEEGDTCTFELVG--EFEMLVHISRK 280
                 789999999999999***********8885.7789***************.3444445.6999********************987..999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957598IPR003340B3 DNA binding domain
SMARTSM010193.5E-4598IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1921100IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-152197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1721100IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-132296No hitNo description
SuperFamilySSF1019361.43E-26182280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-23182280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-22185279No hitNo description
PROSITE profilePS5086315.016187281IPR003340B3 DNA binding domain
PfamPF023628.2E-18187280IPR003340B3 DNA binding domain
SMARTSM010192.1E-18187281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAQSYDRGTN NNEKGRDVKE HIPLGFVKYM KGNTTGSVFL TGPSGNTWQV DLIKTGDGLF  60
FRGGWDTFVK DHLAEFGDFF VFKNTSDFHF KVTIFDKSAC EKQSAFHAKC SQDLGNFVDS  120
KGKKRRKVQT DVLSSGTFQG APQTRRMNTR SMAAFAKTDP GSYNLLMQTQ THEKRESWVL  180
ASHSRSFVKR MTRYNVHQVF VLRVPAPFMK DNFLDCQSRN IVLRIPEGNE WIVKLVRQGG  240
CGCLSGGWNN FVRDNHIEEG DTCTFELVGE FEMLVHISRK REEFLQVVGS DA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115594.11e-100B3 domain-containing protein Os01g0723500-like isoform X2
RefseqXP_028115597.11e-100B3 domain-containing protein Os01g0723500-like isoform X4
RefseqXP_028115598.11e-100B3 domain-containing protein Os01g0723500-like isoform X5
TrEMBLA0A2R6RDF60.0A0A2R6RDF6_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-17B3 family protein